Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Caballeronia cordobensis strain:LMG 27620

ABSTRACT: Caballeronia cordobensis strain:LMG 27620 Genome sequencing and assembly

PROVIDER: PRJNA288427 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	LGRC01.dat.gz	Other
	LGRC01.fasta.gz	Fasta.gz
	LGRC01.master.dat	Other
	LGRC01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Caballeronia grimmiae strain:R27

Project description:Caballeronia grimmiae strain:R27 Genome sequencing and assembly

| PRJNA238424 | ENA

Caballeronia sordidicola strain:S170

Project description:Caballeronia sordidicola strain:S170 Genome sequencing and assembly

| PRJNA248610 | ENA

Caballeronia megalochromosomata strain:JC2949

Project description:Caballeronia megalochromosomata strain:JC2949 Genome sequencing and assembly

| PRJNA241423 | ENA

Caballeronia grimmiae strain:R27

Project description:Caballeronia grimmiae strain:R27 Genome sequencing

| PRJNA241422 | ENA

Caballeronia sordidicola strain:PAMC 26577

Project description:Caballeronia sordidicola strain:PAMC 26577 Genome sequencing and assembly

| PRJNA355627 | ENA

Caballeronia glathei strain:DSM 50014

Project description:Caballeronia glathei strain:DSM 50014 Genome sequencing and assembly

| PRJNA238428 | ENA

Caballeronia humi strain:KEMC7302-068

Project description:Caballeronia humi strain:KEMC7302-068 Genome sequencing and assembly

| PRJNA240350 | ENA

Caballeronia jiangsuensis strain:MP-1

Project description:Caballeronia jiangsuensis strain:MP-1 Genome sequencing and assembly

| PRJNA238425 | ENA

Caballeronia sordidicola strain:PAMC 26592

Project description:Caballeronia sordidicola strain:PAMC 26592 Genome sequencing and assembly

| PRJNA355370 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data