Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Marine metagenome

ABSTRACT: Magadalen Islands Spatio Temporal (MIST) Large Fraction

PROVIDER: PRJNA289000 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2097751.fastq.gz	Fastqsanger.gz
	SRR2097752.fastq.gz	Fastqsanger.gz
	SRR2097753.fastq.gz	Fastqsanger.gz
	SRR2097754.fastq.gz	Fastqsanger.gz
	SRR2097755.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

marine metagenome

Project description:Magdalen Island Spatio Temporal (MIST) Raw sequence reads

| PRJNA288997 | ENA

marine metagenome

Project description:Line Islands Genome sequencing

| PRJNA253472 | ENA

Expression data from RAW 264.7 cells treated with control or Mist-targeted GapmeR

Project description:Mist is a novel lncRNA found to be downregulated in macrophages of mice with diet-induced obesity compared to control diet. The regulatory mechanisms of mouse Mist are unknown. We induced Mist knockdown in mouse macrophage cell line RAW 264.7 and used microarray to detail Mist-mediated global gene expression changes and identify distinct classes of up- and down-regulated genes.

2020-01-30 | GSE126839 | GEO

Spatial-proteomics reveals phospho-signaling dynamics at subcellular resolution

Project description:Dynamic change in subcellular localization of signaling proteins is a general concept that eukaryotic cells evolved for responding and elicit a coordinated response to stimuli. Mass spectrometry (MS)-based proteomics in combination with subcellular fractionation can provide comprehensive maps of spatio-temporal regulation of cells but this is highly challenging involving laborious workflows that do not cover the phosphoproteome level. Here we present a high-throughput workflow based on sequential cell fractionation to profile the global (phospho)proteome dynamics across six distinct subcellular fractions. We benchmarked the workflow by studying spatio-temporal EGFR phospho-signaling dynamics in-vitro in HeLa cells and in-vivo in mouse tissues. Finally, we investigated the spatio-temporal stress signaling, revealing cellular relocation of ribosomal proteins in response to hypertonicity and muscle contraction.

2021-11-18 | PXD023690 | Pride

Malinzi2018 - tumour-immune interaction model

Project description:The paper describes a spatio-temporal mathematical model, in the form of a moving boundary problem, to explain cancer dormancy is developed. Created by COPASI 4.24 (Build 197) Abstract: A spatio-temporal mathematical model, in the form of a moving boundary problem, to explain cancer dormancy is developed. Analysis of the model is carried out for both temporal and spatio-temporal cases. Stability analysis and numerical simulations of the temporal model replicate experimental observations of immune-induced tumour dormancy. Travelling wave solutions of the spatio-temporal model are determined using the hyperbolic tangent method and minimum wave speeds of invasion are calculated. Travelling wave analysis depicts that cell invasion dynamics are mainly driven by their motion and growth rates. A stability analysis of the spatio-temporal model shows a possibility of dynamical stabilization of the tumour-free steady state. Simulation results reveal that the tumour swells to a dormant level.

2024-09-02 | BIOMD0000000809 | BioModels

Identification of novel functional TBP-binding sites and general factor repertoires

Project description:We performed a comprehensive ChIP-on-chip analysis for 28 transcription factors on a large set of known and novel TBP binding sites experimentally identified via ChIP-cloning. A large fraction of identified TBP binding sites is located in introns or lacks a gene/mRNA annotation and found to direct transcription. Distinct profiles for general transcription factors and TAF-containing complexes were uncovered for RNAP II promoters located in CpG- and non-CpG islands suggesting distinct transcription initiation pathways. Keywords: TBP, Promoter, ChIP-on-chip, transcription factor profiling

2007-01-17 | GSE6738 | GEO

Homo sapiens

Project description:Spatio-temporal transcriptome of the human brain

| PRJNA134455 | ENA

Spa sulfurous water metagenomes: spatio-temporal study

Project description:Spa sulfurous water metagenomes: spatio-temporal study

| PRJEB35095 | ENA

Higher spatial than temporal variation in soil protist beta-diversity along elevation gradients

Project description:Soil protists spatio-temporal turnover in mountains

| PRJEB59986 | ENA

marine metagenome

Project description:Protists in Havre-aux-Maisons Lagoon, Magdalen Islands, Quebec, Canada