Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Cryptococcus bacillisporus

ABSTRACT: GMLST and Whole Genome based Population Analysis of Cryptococcus gattii VGIII links Clinical, Veterinary and Environmental Strain, Reveals Divergent Serotype Specific Sub-Populations and Distant Ancestors

PROVIDER: PRJNA289249 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3707760_1.fastq.gz	Fastqsanger.gz
	SRR3707760_2.fastq.gz	Fastqsanger.gz
	SRR3707770_1.fastq.gz	Fastqsanger.gz
	SRR3707770_2.fastq.gz	Fastqsanger.gz
	SRR3707780_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 126

Similar Datasets

Cryptococcus bacillisporus strain:VGIII

Project description:Cryptococcus gattii VGIII Genome sequencing

| PRJNA235210 | ENA

Cryptococcus bacillisporus

Project description:DNAseq of Cryptococcus gattii VGI, VGII, VGIII and VGIV (Farrer et al 2016)

| PRJNA183619 | ENA

Cryptococcus bacillisporus

Project description:Comparison of gene expression in 23 Cryptococcus gattii isolates

| PRJNA117781 | ENA

Cryptococcus bacillisporus

Project description:Emergence of Cryptococcus gattii in the Southeastern United States: A whole genome analysis

| PRJNA295092 | ENA

Expression data analysis of murine pulmonary cryptococcosis induced by C. gattii

2013-07-08 | GSE48595 | GEO

Expression data analysis of murine pulmonary cryptococcosis induced by Cryptococcus gattii and Cryptococcus neoformans

2016-06-22 | GSE83594 | GEO

Cryptococcus gattii

Project description:RNAseq of Cryptococcus gattii VGI, VGII, VGIII and VGIV (Farrer et al mSphere 2018)

| PRJNA428946 | ENA

Project description:DNAseq of Cryptoccocus gattii VGI, VGII, VGIII, VGIV, VGVI (Farrer et al mBio 2019)

| PRJNA476154 | ENA

Expression data analysis of murine pulmonary cryptococcosis induced by C. gattii

Project description:Our previous investigation indicated that high-virulence C. gattii (C. gattii TIMM 4097) tend to reside in the alveoli, whereas low-virulence C. gattii (C. gattii TIMM 4903) tend to be washed out from the alveoli and move into the central side of the respiratory system. To test this hypothesis, we performed microarray assay. C. gattii TIMM 4097 and C. gattii TIMM 4903 were prepared for the study. The mice were anesthetized and the spore suspension was intratracheally injected into each mouse. Mice were sacrificed 15 days after the infection and then examined. Lung of the mice infected with C. gattii TIMM 4097 and C. gattii TIMM 4903 and normal controls were obtained (n=3, respectively. RNA targets preparation was performed according to the manufacturer's protocol using GeneChip(R) 3' IVT Express Kit (Affymetrix). One hundred nanograms of total RNA were converted into double-stranded cDNA template for transcription. In vitro transcription synthesized amplified RNA (aRNA) and incorporated a biotin-conjugated nucleotide. After purification and fragmentation of aRNA, 12.5 ug of them was hybridized to GeneChip(R) Mouse Genome 430 2.0 Array (Affymetrix).The Probe Array was scanned using a GeneChip(R) Scanner 3000 7G

2013-07-08 | E-GEOD-48595 | biostudies-arrayexpress

Expression data analysis of murine pulmonary cryptococcosis induced by Cryptococcus gattii and Cryptococcus neoformans

Project description:Our previous investigation indicated that high-virulence C. gattii (C. gattii R265) tend to reside in the alveoli, whereas low-virulence C. gattii (C. gattii 5815) tend to be washed out from the alveoli and move into the central side of the respiratory system of the mice. Furthermore, C. gattii R265 and 5815 infected mice showed much lesser macrophage response than C. neoformans H99 infected mice. To elucidate the mechanism of this phenomenon from the viewpoint of genetic analysis, we performed this microarray assay. C. gattii R265, C. gattii 5815, and C. neoformans H99 were prepared for the study. The mice were anesthetized and the spore suspension was intratracheally injected into each mouse. Mice were sacrificed 15 days after the infection and then examined. Lungs of the mice infected with C. gattii R265 (n=4), C. gattii 5815 (n=4), and C. neoformans H99 (n=3) and of a normal control (n=1) were obtained. RNA targets preparation was performed according to the manufacturer's protocol using GeneChip(R) 3' IVT Express Kit (Affymetrix). One hundred nanograms of total RNA were converted into double-stranded cDNA template for transcription. In vitro transcription synthesized amplified RNA (aRNA) and incorporated a biotin-conjugated nucleotide. After purification and fragmentation of aRNA, 12.5 ug of them was hybridized to GeneChip(R) Mouse Genome 430 2.0 Array (Affymetrix).The Probe Array was scanned using a GeneChip(R) Scanner 3000 7G.

2016-06-22 | E-GEOD-83594 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data