Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Phytophthora pluvialis isolate:LC9-1

ABSTRACT: Phytophthora pluvialis isolate:LC9-1 Genome sequencing and assembly

PROVIDER: PRJNA290686 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	LGTU01.dat.gz	Other
	LGTU01.fasta.gz	Fasta.gz
	LGTU01.master.dat	Other
	LGTU01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Phytophthora pluvialis isolate:NZFS 3000

Project description:Phytophthora pluvialis isolate:NZFS 3000 Genome sequencing and assembly

| PRJNA290685 | ENA

Phytophthora pluvialis

Project description:Phytophthora pluvialis overview

| PRJNA290821 | ENA

Phytophthora pluvialis strain:NZFS 3000

Project description:Phytophthora pluvialis strain:NZFS 3000 Genome sequencing and assembly

| PRJNA316743 | ENA

ChIP-seq of phytophthora sojae P6497

Project description:Centromeres are chromosomal regions that serve as platforms for kinetochore assembly and spindle attachments, ensuring accurate chromosome segregation during cell division. Despite functional conservation, centromeric sequences are diverse and usually repetitive across species, making them challenging to assemble and identify. Here, we describe centromeres in the model oomycete Phytophthora sojae by combining long-read sequencing-based genome assembly and chromatin immunoprecipitation for the centromeric histone CENP-A followed by high-throughput sequencing (ChIP-seq). P. sojae centromeres cluster at a single focus in the nucleus at different life stages and during nuclear division. We report a highly contiguous genome assembly of the P. sojae reference strain, which enabled identification of 15 highly enriched CENP-A binding regions as putative centromeres. By focusing on 10 intact regions, we demonstrate that centromeres in P. sojae are regional, spanning 211 to 356 kb. Most of these regions are transposon-rich, poorly transcribed, and lack the euchromatin mark H3K4me2 but are embedded within regions with the heterochromatin marks H3K9me3 and H3K27me3.

2020-01-07 | GSE143137 | GEO

Phytophthora ramorum isolate:CDFA1418886

Project description:Phytophthora ramorum isolate:CDFA1418886 Genome sequencing and assembly

| PRJNA434169 | ENA

Phytophthora pini isolate:Ppi

Project description:Phytophthora pini isolate:Ppi Genome sequencing and assembly

| PRJNA825349 | ENA

Phytophthora pseudosyringae isolate:SCRP734

Project description:Phytophthora pseudosyringae isolate:SCRP734 Genome sequencing and assembly

| PRJNA702035 | ENA

Phytophthora kernoviae isolate:Chile4

Project description:Phytophthora kernoviae isolate:Chile4 Genome sequencing and assembly

| PRJNA328394 | ENA

Phytophthora medicaginis isolate:7831

Project description:Phytophthora medicaginis isolate:7831 genome sequencing and assembly

| PRJNA756124 | ENA

Phytophthora boehmeriae isolate:SCRP23

Project description:Phytophthora boehmeriae isolate:SCRP23 Genome sequencing and assembly

| PRJNA702033 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data