Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Leptospirillum ferriphilum strain:Sp-Cl

ABSTRACT: Leptospirillum ferriphilum strain:Sp-Cl Genome sequencing and assembly

PROVIDER: PRJNA290892 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	LGSH01.dat.gz	Other
	LGSH01.fasta.gz	Fasta.gz
	LGSH01.master.dat	Other
	LGSH01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Leptospirillum ferriphilum

Project description:Leptospirillum ferriphilum overview

| PRJNA68401 | ENA

Leptospirillum ferriphilum YSK

Project description:Leptospirillum ferriphilum YSK Genome sequencing

| PRJNA232614 | ENA

Response of Leptospirillum ferriphilum DSM14647 to elevated NaCl concentration

Project description:Leptospirillum ferriphilum is an important acidophilic ferrous iron-oxidizing species for bioleaching or biooxidation to win metals like copper or gold, respectively. L. ferriphilum is inhibited by elevated conentrations of chloride. In the present study, the type strain of L. ferriphilum (i.e. strain DSM 14647) by subcultivation in presence of increasing chloride concentrations was adapted to tolerate higher concentrations of NaCl. The adapted culture was grown in presence of 180 mM NaCl or and the non-adapted culture without NaCl, and both were harvested in the late exponential phase. Total RNA was isolated and checked for quality and integrity. For each of the two conditions three RNA preparations of high quality (integrity number above 7) were pooled. Ribosomal RNA was depleted. DNA libraries for paired-end sequencing on an Illumina MiSeq were generated with a TruSeq stranded mRNA library prep kit (Illumina). Among the genes up-regulated were those coding for proteins likely involved in intracellular pH regulation, response to reactive oxygen species, and Fe-S cluster biosynthesis. Among the genes down-regulated in presence of chloride were those related to lipopolysaccharide and peptidoglykane synthesis, and interestingly also those for (hydroxy) ectoine biosynthesis.

2022-03-31 | E-MTAB-11136 | biostudies-arrayexpress

Leptospirillum ferriphilum strain:DX

Project description:Leptospirillum ferriphilum DX Genome sequencing and assembly

| PRJNA353739 | ENA

Leptospirillum ferriphilum strain:ZJ

Project description:Leptospirillum ferriphilum ZJ Genome sequencing and assembly

| PRJNA353751 | ENA

Leptospirillum ferriphilum strain:DX

Project description:Leptospirillum ferriphilum DX Genome sequencing

| PRJNA244732 | ENA

Leptospirillum ferriphilum strain:ZJ

Project description:Leptospirillum ferriphilum ZJ Genome sequencing