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Alteromonas naphthalenivorans strain:SN2

ABSTRACT: Alteromonas naphthalenivorans strain:SN2 Raw sequence reads

PROVIDER: PRJNA292979 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR2166612_1.fastq.gz	Fastqsanger.gz
	SRR2166612_2.fastq.gz	Fastqsanger.gz
	SRR2166618_1.fastq.gz	Fastqsanger.gz
	SRR2166618_2.fastq.gz	Fastqsanger.gz
	SRR2166619_1.fastq.gz	Fastqsanger.gz

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Emergence of metabolic coupling to the heterotroph Alteromonas promotes dark survival in Prochlorococcus

Project description:Prochlorococcus is found throughout the euphotic zone in the oligotrophic open ocean. Deep mixing and sinking in aggregates or while attached to particles can, however, transport cells below this sunlit zone, depriving them of light for extended periods of time and influencing their circulation via ocean currents. Viability of these cells over extended periods of darkness could shape the ecology and evolution of the Prochlorococcus collective. We have shown that when co-cultured with a heterotrophic microbe and subjected to repeated periods of extended darkness, Prochlorococcus cells develop a heritable dark-tolerant phenotype – through an apparent epigenetic mechanism – such that they survive longer periods of darkness. Here we examine this adaptation at the level of physiology and metabolism in co-cultures of dark-tolerant and parent strains of Prochlorococcus, each grown with the heterotroph Alteromonas under diel light:dark conditions. The relative abundance of Alteromonas is higher in dark-tolerant than parental co-cultures, while dark tolerant Prochlorococcus cells are also larger, contain less chlorophyll, and are less synchronized to the light:dark cycle. Meta-transcriptome analysis of the cultures further suggests that dark-tolerant co-cultures undergo a coupled shift in which Prochlorococcus uses more organic carbon and less photosynthesis, and Alteromonas uses more organic acids and fewer sugars. Collectively, the data suggest that dark adaptation involves a loosening of the coupling between Prochlorococcus metabolism and the light:dark cycle and a strengthening of the coupling between the carbon metabolism of Prochlorococcus and Alteromonas.

2024-04-23 | GSE264347 | GEO

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