Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rigidoporus microporus strain:ED310

ABSTRACT: Rigidoporus microporus

PROVIDER: PRJNA293866 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2187440_1.fastq.gz	Fastqsanger.gz
	SRR2187440_2.fastq.gz	Fastqsanger.gz
	SRR2187435_1.fastq.gz	Fastqsanger.gz
	SRR2187435_2.fastq.gz	Fastqsanger.gz
	SRR2187436_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Rigidoporus microporus

Project description:Rigidoporus microporus overview

| PRJNA347391 | ENA

Rigidoporus microporus strain:ED310

Project description:Rigidoporus microporus ED310 Standard Draft genome sequencing

| PRJNA345706 | ENA

Project description:WGS of Rigidoporus lignosus

| PRJNA1034759 | ENA

Rigidoporus sp. FMD21 isolate:FMD21

Project description:Rigidoporus sp. FMD21 isolate:FMD21 Genome sequencing and assembly

| PRJNA648814 | ENA

Campylobacter jejuni comparative genome: Control strain 11168 vs. strain NW

Project description:Gene content comparison of control C.j. strain 11168 which colonizes and causes disease in a murine model versus strain NW which colonizes but does not elicit disease symptomology in the mouse model. Keywords: DNA/DNA comparison

2008-12-03 | GSE13794 | GEO

Very Long-Term Treatment with a Lactobacillus Probiotic Preparation, Lactobacillus Casei Strain Shirota

Project description:Primary outcome(s): life and death

| 103768 | ecrin-mdr-crc

Mouse adapted strain CGH

Project description:Microarray based comparative genomic hybridization of mouse adapted strains: 10700 pre-mouse SS1, SS1(A.L.)Sydney strain obtained directly from Adrian Lee, NSH79 Salama lab strain labeled as SS1-now know distinct, G27 obtained from Antonello Covacci. Genomic DNA from est strain (Cy5), genomic DNA from reference strains used for array fabrication (equimolar mix of 26695 and J99 genomic DNA) An all pairs experiment design type is where all labeled extracts are compared to every other labeled extract. Keywords: all_pairs

2006-12-15 | GSE6530 | GEO

Bacillus cereus strain 31673

Project description:Comparative Genomic Hybridization. Analysis of genomic content of closely related Bacillus species. Refer to individual records for strain information. Refer to platform and individual sample records for experimental protocols. Keywords: other

2004-10-28 | GSE568 | GEO

H. pylori strain comparisons

Project description:Helicobacter pylori enhances the risk for ulcer disease and gastric cancer, yet only a minority of H. pylori-colonized individuals develop disease. We examined the ability of two H. pylori isolates to induce differential host responses in vivo or in vitro, and then used an H. pylori whole genome microarray to identify bacterial determinants related to pathogenesis. Gastric ulcer strain B128 induced more severe gastritis, proliferation, and apoptosis in gerbil mucosa than did duodenal ulcer strain G1.1, and gastric ulceration and atrophy occurred only in B128+ gerbils. In vitro, gerbil-passaged B128 derivatives significantly increased IL-8 secretion and apoptosis compared with G1.1 strains. DNA hybridization to the microarray identified several strain-specific differences in gene composition including a large deletion of the cag pathogenicity island in strain G1.1. Partial and complete disruption of the cag island in strain B128 attenuated induction of IL-8 in vitro and significantly decreased gastric inflammation in vivo. These results indicate that the ability of H. pylori to regulate epithelial cell responses related to inflammation depends on the presence of an intact cag pathogenicity island. Use of an H pylori whole genome microarray is an effective method to identify differences in gene content between H. pylori strains that induce distinct pathological outcomes in a rodent model of H. pylori infection. Set of arrays organized by shared biological context, such as organism, tumors types, processes, etc. Keywords: Logical Set

2005-08-16 | GSE3135 | GEO