Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oreochromis niloticus

ABSTRACT: Global DNA methylation changes in Nile tilapia gonad during high-temperature induced masculinization

PROVIDER: PRJNA293932 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2183536_1.fastq.gz	Fastqsanger.gz
	SRR2183536_2.fastq.gz	Fastqsanger.gz
	SRR2183537_1.fastq.gz	Fastqsanger.gz
	SRR2183537_2.fastq.gz	Fastqsanger.gz
	SRR2183538_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Oreochromis niloticus niloticus

Project description:Global epigenetic analysis of Nile tilapia under high temperature induced masculinization

| PRJNA290224 | ENA

Oreochromis niloticus

Project description:Investigation of temperature-dependent sex reversal in Nile tilapia using ddRAD-seq

| PRJNA354565 | ENA

Oreochromis niloticus

Project description:Nile tilapia RAD Linkage Map

| PRJNA185431 | ENA

Oreochromis niloticus

Project description:Nile tilapia raw sequence reads

| PRJNA287740 | ENA

Oreochromis niloticus

Project description:Nile Tilapia Gonads Transcriptome and Methylome

| PRJNA477445 | ENA

Oreochromis niloticus

Project description:Nile Tilapia Oreochromis niloticus sample Raw sequence reads

| PRJNA433300 | ENA

Oreochromis niloticus

Project description:Transcriptome sequencing of Nile tilapia hepatopancreas in different salinity

| PRJNA280611 | ENA

Nile tilapia (Oreochromis niloticus) gene expression profiling in males and females at early embryonic development (2, 5 and 9 days post fertilization )

Project description:Commercial production of tilapia relies on monosex cultures of males, which so far proved difficult to maintain in large scale production facilities. Thus, a better understanding of the genetic architecture of the complex trait of sex determination in tilapia is needed.We aimed to detect genes that were differentially expressed by gender at early embryonic development. Artificial fertilization of O. niloticus females with either sex-reversed males (ΔXX) or genetically-modified YY 'supermales' resulted in all-female and all-male embryos, respectively. Pools of all-female and all-male embryos at 2, 5 and 9 days post fertilization were used for custom Agilent eArray. 56 pool samples of Nile tilapia full siblings groups (female or male) at day 2, 5 or 9 post fertilization were subjected to total RNA extraction from whole embryo tissues and hybridized to the custom Agilent array. Each sample was yielded from different cross of artificial fertilization: six dams X five sires. The resulting gender were known based on the sire, sex-reversed males (ΔXX) or genetically-modified YY 'supermales' resulted in all-female and all-male embryos, respectively.

2014-11-01 | E-GEOD-50974 | biostudies-arrayexpress

Oreochromis niloticus

Project description:Comparison of low temperature transcriptomes between tilapia and zebrafish

| PRJNA268919 | ENA

Total RNA sequencing of the liver tissues of Oreochromis niloticus (Nile Tilapia) and of Pundamilia nyerei

Project description:Cichlids fishes exhibit extensive phenotypic diversification and speciation. In this study we integrate transcriptomic and proteomic signatures from two cichlids species, identify novel open reading frames (nORFs) and perform evolutionary analysis on these nORF regions. We embark comparative transrcriptomics and proteogenomic analysis of two metabolically active tissues, the testes and liver, of two cichlid species Oreochromis niloticus (Nile tilapia, ON) and Pundamilia nyererei (Makobe Island, PN). Our results suggest that the time scale of speciation of the two species can be better explained by the evolutionary divergence of these nORF genomic regions.

2021-05-17 | GSE150744 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data