Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Xylella fastidiosa subsp. fastidiosa strain:Temecula

ABSTRACT: Xylella fastidiosa subsp. fastidiosa 'Temecula' biofilm transcriptome

PROVIDER: PRJNA295424 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2451861_1.fastq.gz	Fastqsanger.gz
	SRR2451861_2.fastq.gz	Fastqsanger.gz
	SRR2450253_1.fastq.gz	Fastqsanger.gz
	SRR2450253_2.fastq.gz	Fastqsanger.gz
	SRR2461462_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Xylella fastidiosa subsp. fastidiosa strain:Temecula1

Project description:Xylella fastidiosa subsp. fastidiosa strain:Temecula1 Transcriptome or Gene expression

| PRJNA556203 | ENA

Xylella fastidiosa subsp. fastidiosa

Project description:Population genomics of Xylella fastidiosa subsp. fastidiosa in Taiwan

| PRJNA715299 | ENA

Xylella fastidiosa subsp. fastidiosa strain:IVIA5235

Project description:Xylella fastidiosa subsp. fastidiosa strain:IVIA5235 Genome sequencing

| PRJNA488161 | ENA

Xylella fastidiosa 9a5c: gomesin-treated cells vs. control

Project description:In the xylem vessels of susceptible hosts, such as citrus trees or grapevines, Xylella fastidiosa forms biofilm like-colonies that can block water transport, which appears to correlate to disease symptoms. Besides helping host colonization, bacterial biofilms play an important role in resistance against antimicrobial agents, for instance antimicrobial peptides (AMP). Here we show that gomesin, a potent AMP from a Brazilian tarantula spider, modulates X. fastidiosa gene expression profile upon 60 min treatment with a sublethal concentration. Data from DNA microarray hybridizations revealed that among the up-regulated coding sequences (CDS), some are related to biofilm production. In addition, we show that the biofilm formed by gomesin-treated bacteria is thicker than that formed by non-treated cells or cells exposed to streptomycin. We have also observed that treatment of X. fastidiosa with sublethal concentration of gomesin before inoculation in tobacco plants correlates with reduction in CVC symptoms, an effect possibly due to trapping of bacterial cells to fewer xylem vessels given the enhancement in biofilm production. Together, our results suggest that X. fastidiosa can selectively sense a sublethal concentration of gomesin modulating its gene expression to produce a stronger biofilm that may protect itself against the toxic effects of this AMP.

2010-01-06 | GSE17605 | GEO

Xylella fastidiosa subsp. fastidiosa strain:GV230

Project description:Xylella fastidiosa subsp. fastidiosa GV230 genome sequencing and assembly

| PRJNA656404 | ENA

Xylella fastidiosa subsp. fastidiosa strain:Temecula1

Project description:Xylella fastidiosa subsp. fastidiosa strain:Temecula1 Raw sequence reads

| PRJNA310348 | ENA

Xylella fastidiosa subsp. fastidiosa strain:XYL2055

Project description:Xylella fastidiosa subsp. fastidiosa strain:XYL2055 Genome sequencing and assembly

| PRJNA484623 | ENA

Xylella fastidiosa subsp. fastidiosa strain:XYL1732

Project description:Xylella fastidiosa subsp. fastidiosa strain:XYL1732 Genome sequencing and assembly

| PRJNA484624 | ENA

Xylella fastidiosa subsp. fastidiosa strain:GV156

Project description:Xylella fastidiosa subsp. fastidiosa strain:GV156 Genome sequencing and assembly

| PRJNA559432 | ENA

Xylella fastidiosa subsp. fastidiosa DSM 10026

Project description:Xylella fastidiosa subsp. fastidiosa DSM 10026 Genome sequencing

| PRJNA221054 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data