Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Homo sapiens

ABSTRACT: Identification and characterization of circular RNAs as a new class of putative biomarkers in human blood

PROVIDER: PRJNA297345 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2537080.fastq.gz	Fastqsanger.gz
	SRR2537081.fastq.gz	Fastqsanger.gz
	SRR2537082.fastq.gz	Fastqsanger.gz
	SRR2537083.fastq.gz	Fastqsanger.gz
	SRR2537084.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Identification of Blood Circular RNAs as the Potential Biomarkers for Acute Ischemic Stroke

Project description:Identification of Blood Circular RNAs as the Potential Biomarkers for Acute Ischemic Stroke

| PRJNA577599 | ENA

Project description:Identification and characterization of MCF01A circular RNAs

| PRJNA290555 | ENA

Homo sapiens

Project description:Expanded identification and characterization of mammalian circular RNAs

| PRJNA223608 | ENA

Circular RNA profile of human cervical squamous cell carcinoma

Project description:Circular RNAs (circRNAs) represent a widespread class of non-coding RNAs, which drew little attention in the past. Recently, limited data showed their promising future to act as biomarkers in human cancer, but the characteristics and functions remain largely unknown in human cervical cancer. In this study, we demonstrated the expression profile of circRNAs in cervical squamous cell carcinoma(SCC) patients with circRNA microarray, and identified a large number of circRNAs possibly expressed in SCC.

2017-08-16 | GSE102686 | GEO

Hypoxia effects on the transcriptome of HeLa cells

Project description:Hypoxia is associated with several diseases, including cancer. Circular RNAs (circRNAs) are a novel class of non-coding RNAs that have been implicated in multiple cancers and attract increasing attention as potential biomarkers. In this study, the transcriptome-wide response of human HeLa cervical cancer cells to hypoxia was investigated. The circRNA signatures as well as differential gene expression and alternative splicing were analyzed by integrating available tools with custom approaches for quantification and statistical analysis.

2019-12-04 | GSE131379 | GEO

Homo sapiens

Project description:Identification and characterization of MCF01A circular RNAs [ChIP-seq]

| PRJNA290558 | ENA

Homo sapiens

Project description:Identification and characterization of MCF01A circular RNAs [RNA-seq]

| PRJNA290557 | ENA

CircRNAome diversity in human mature B-cells, T-cells and monocytes

Project description:Circular RNAs (circRNAs) were shown to be expressed in all human tissue but detailed insight in circRNA diversity among tissues and cellular differentiation stages is lagging behind. This study provides comprehensive data on circRNA expression in the three major mature blood cell populations of healthy subjects. Over 36,000 circRNAs were identified in B-cells, T-cells and monocytes, 34% of which were novel. In addition, putative new genes producing circRNAs were uncovered. The definition of cell type specific circRNA expression signatures revealed that alternative circularization is a common phenomenon showing cell population specific patterns. Abundance of circRNAs resulted largely uncorrelated to host gene linear expression. Several circRNAs were validated, including circular isoforms expressed by leukemia-associated genes PAX5 and IKZF1. These results and new data will help to further our understanding of molecular mechanisms underlying cell biology of blood cells, and are a reference to explore circRNA alterations in haematological diseases.

2019-12-17 | GSE110159 | GEO

circRNA expression and characterization in multiple sclerosis patients and controls

Project description:Circular RNAs (circRNAs) are a class of non-coding RNAs increasingly emerging as crucial actors in the pathogenesis and progression of human diseases, including autoimmune and neurological disorders as multiple sclerosis (MS). We performed RNA-seq experiments on circRNA-enriched samples, derived from peripheral blood mononuclear cells of 10 MS patients and 10 matched controls. We detected 5,663 circRNAs, and expression analysis revealed 166 differentially expressed circRNAs in MS patients.

2022-12-01 | GSE161196 | GEO

circRNA expression profile from three Parkinson's disease(PD) patients and three healthy controls

Project description:To explore the involvement of circular RNAs in PD development, we analyzed levels of circular RNAs in human peripheral blood from PD patients and healthy patients. 10,145 expressed circRNAs were identified.

2022-06-01 | GSE198273 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data