Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Tamiasciurus hudsonicus

ABSTRACT: Tamiasciurus hudsonicus overview

PROVIDER: PRJNA297936 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2546890_1.fastq.gz	Fastqsanger.gz
	SRR2546890_2.fastq.gz	Fastqsanger.gz
	SRR2546900_1.fastq.gz	Fastqsanger.gz
	SRR2546900_2.fastq.gz	Fastqsanger.gz
	SRR2546910_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 208

Similar Datasets

Tamiasciurus hudsonicus

Project description:Tamiasciurus hudsonicus test2

| PRJNA297781 | ENA

Poecile hudsonicus strain:NA

Project description:Poecile hudsonicus

| PRJNA965447 | ENA

Numenius hudsonicus strain:NA

Project description:Numenius hudsonicus

| PRJNA964104 | ENA

Tamiasciurus hudsonicus

Project description:Tamiasciurus hudsonicus Raw sequence reads

| PRJNA297448 | ENA

Tamiasciurus hudsonicus

Project description:Tamiasciurus hudsonicus external genital microbiome composition

| PRJNA295603 | ENA

When east meets west: population structure of a high-latitude resident species, the boreal chickadee (Poecile hudsonicus).

Project description:The population genetic structure of northern boreal species has been strongly influenced both by the Quaternary glaciations and the presence of contemporary barriers, such as mountain ranges and rivers. We used a combination of mitochondrial DNA (mtDNA), nuclear microsatellites and spatial distribution modelling to study the population genetic structure of the boreal chickadee (Poecile hudsonicus), a resident passerine, and to investigate whether historical or contemporary barriers have influenced this northern species. MtDNA data showed evidence of eastern and western groups, with secondary admixture occurring in central Canada. This suggests that the boreal chickadee probably persisted in multiple glacial refugia, one in Beringia and at least one in the east. Palaeo-distribution modelling identified suitable habitat in Beringia (Alaska), Atlantic Canada and the southern United States, and correspond to divergence dates of 60-96 kya. Pairwise FST values for both mtDNA and microsatellites were significant for all comparisons involving Newfoundland, though mtDNA data suggest a more recent separation. Furthermore, unlike mtDNA data, nuclear data support population connectivity among the continental populations, possibly due to male-biased dispersal. Although both are significant, the isolation-by-distance signal is much stronger for mtDNA (r(2)=0.51) than for microsatellites (r(2)=0.05), supporting the hypothesis of male-biased dispersal. The population structure of the boreal chickadee was influenced by isolation in multiple refugia and contemporary barriers. In addition to geographical distance, physical barriers such as the Strait of Belle Isle and northern mountains in Alaska are restricting gene flow, whereas the Rocky Mountains in the west are a porous barrier.

| S-EPMC3807262 | biostudies-literature

Divergent Patterns of Endogenous Small RNA Populations From Seed and Vegetative Tissues of Glycine max

Project description:An overview of small RNAs sequences existing in seed development and contrasted with vegetative tissues of the soybean

2012-10-09 | GSE36728 | GEO

Tbx6b ChIP-chip on Ciona intestinalis embryo (early gastrula)

Project description:A genomic overview of in vivo binding of a transcription factor Tbx6b in the ascidian early gastrula embryo.

2010-03-09 | GSE17694 | GEO

SoxC ChIP-chip on Ciona intestinalis embryo (early gastrula)

Project description:A genomic overview of in vivo binding of a transcription factor SoxC in the ascidian early gastrula embryo.

2010-03-09 | GSE17692 | GEO

Snail ChIP-chip on Ciona intestinalis embryo (early gastrula)

Project description:A genomic overview of in vivo binding of a transcription factor Snail in the ascidian early gastrula embryo.