Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Cold seep metagenome

ABSTRACT: S2A, S2B, S4A, S4B, S6A, S6B Raw sequence reads

PROVIDER: PRJNA298111 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2581541.fastq.gz	Fastqsanger.gz
	SRR2581552.fastq.gz	Fastqsanger.gz
	SRR2581533.fastq.gz	Fastqsanger.gz
	SRR2581554.fastq.gz	Fastqsanger.gz
	SRR2581557.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

cold seep metagenome

Project description:cold seep metagenome Raw sequence reads

| PRJNA702903 | ENA

cold-seep bottom waters

Project description:cold-seep bottom waters metagenomic raw sequence reads

| PRJNA1073185 | ENA

cold-seep bottom waters

Project description:cold-seep bottom waters metatranscriptomic raw sequence reads

| PRJNA1073186 | ENA

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

Metagenome sequencing and 768 microbial genomes from cold seep in South China Sea.

Project description:Cold seep microbial communities are fascinating ecosystems on Earth which provide unique models for understanding the living strategies in deep-sea distinct environments. In this study, 23 metagenomes were generated from samples collected in the Site-F cold seep field in South China Sea, including the sea water closely above the invertebrate communities, the cold seep fluids, the fluids under the invertebrate communities and the sediment column around the seep vent. By binning tools, we retrieved a total of 768 metagenome assembled genome (MAGs) that were estimated to be >60% complete. Of the MAGs, 61 were estimated to be >90% complete, while an additional 105 were >80% complete. Phylogenomic analysis revealed 597 bacterial and 171 archaeal MAGs, of which nearly all were distantly related to known cultivated isolates. In the 768 MAGs, the abundant Bacteria in phylum level included Proteobacteria, Desulfobacterota, Bacteroidota, Patescibacteria and Chloroflexota, while the abundant Archaea included Asgardarchaeota, Thermoplasmatota, and Thermoproteota. These results provide a dataset available for further interrogation of deep-sea microbial ecology.

| S-EPMC9357000 | biostudies-literature

Haima cold seep microbial communities

Project description:Haima cold seep microbial communities Raw sequence reads

| PRJNA1097764 | ENA

Cold seep sediments

Project description:Cold seep sediments Metagenomic sequence

| PRJNA1003025 | ENA

Haima cold seep sediment eukaryotic 18S samples

Project description:Haima cold seep sediment eukaryotic 18S samples Raw sequence reads

| PRJNA1048635 | ENA

cold seep metagenome

Project description:Metagenomes of syntrophic sulfate reducing partner bacteria of ANME from single aggregate sequencing

| PRJNA762493 | ENA

cold seep metagenome

Project description:Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.C10 metagenome

| PRJNA469172 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data