Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Taenia asiatica isolate:TASYD01

ABSTRACT: Taenia asiatica genome sequencing

PROVIDER: PRJNA299871 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR2890210_1.fastq.gz	Fastqsanger.gz
	SRR2890210_2.fastq.gz	Fastqsanger.gz
	SRR2890211_1.fastq.gz	Fastqsanger.gz
	SRR2890211_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 21

Similar Datasets

Taenia asiatica isolate:Taenia

Project description:Taenia asiatica isolate:Taenia Genome sequencing

| PRJNA631505 | ENA

Taenia asiatica

Project description:Taenia asiatica overview

| PRJNA261761 | ENA

Taenia asiatica

Project description:Taenia asiatica Raw sequence reads

| PRJNA682789 | ENA

Taenia asiatica

Project description:Taenia asiatica Raw sequence reads

| PRJNA682785 | ENA

Diagnosis of Taenia solium infections based on “mail order” RNA-sequencing of single tapeworm egg isolates from stool samples

Project description:Combined community health programs aiming at health education, preventive antiparasitic chemotherapy, and vaccination of pigs have proven their potential to regionally reduce and even eliminate Taenia solium infections that are associated with a high risk of neurological disease through ingestion of T. solium eggs. Yet it remains challenging to target T. solium endemic regions precisely or to make exact diagnoses in individual patients. One major reason is that the widely available stool microscopy may identify Taenia ssp. eggs in stool samples as such, but fails to distinguish between invasive (T. solium) and less invasive Taenia (T. saginata, T. asiatica, and T. hydatigena) species. The identification of Taenia ssp. eggs in routine stool samples often prompts a time-consuming and frequently unsuccessful epidemiologic workup in remote villages far away from a diagnostic laboratory. Here we present “mail order” single egg RNA-sequencing, a new method allowing the identification of the exact Taenia ssp. based on a few eggs found in routine diagnostic stool samples. We provide first T. solium transcriptome data, which show extremely high mitochondrial DNA (mtDNA) transcript counts that can be used for subspecies identification. “Mail order” RNA-sequencing can be administered by health personnel equipped with basic laboratory tools such as a microscope, a Bunsen burner, and access to an international post office for shipment of samples to a next generation sequencing facility. Our suggested workflow combines traditional stool microscopy, RNA-extraction from single Taenia eggs with mitochondrial RNA-sequencing, followed by bioinformatic processing with a basic laptop computer. The workflow could help to better target preventive healthcare measures and improve diagnostic specificity in individual patients based on incidental findings of Taenia ssp. eggs in diagnostic laboratories with limited resources.

2021-11-06 | GSE175668 | GEO

High-throughput sequencing of small RNAs from adult Taenia multiceps

Project description:sRNA profiling from adult Taenia multiceps by Illumina high-throughput sequencing was used to increase our understanding of the molecular regulation mechanisms of the cestode,find novel biomarkers for the parasitic disease and search new strategies to control these parasites. examination of 6 individuals of adult stage of Taenia multiceps (pooled)

2013-11-22 | E-GEOD-35647 | biostudies-arrayexpress

Taenia saginata isolate:TSAYD01

Project description:Taenia saginata Genome Sequencing

| PRJNA71493 | ENA

High-throughput sequencing of small RNAs from adult Taenia multiceps

2013-11-22 | GSE35647 | GEO

Taenia asiatica Genome sequencing

Project description:Genomic assembly of cestode Taenia asiatica, as part of the 50 Helminth Genomes Initiative sequencing of the parasitic worms that have the greatest impact on human, agricultural and veterinary disease and cause significant global health issues particularly in the developing world, or those used as model organisms.

| PRJEB532 | ENA

Taenia multiceps isolate:Gns01

Project description:Taenia multiceps isolate:Gns01 Genome sequencing and assembly

| PRJNA307624 | ENA