Project description:Proteogenomics of Parhyale hawaiensis ovaries to define the core-proteome of female reproductive tissues from crustacean amphipods

2015-09-21 | PXD002310 | Pride

Parhyale hawaiensis

Project description:Bisulfite sequencing of Parhyale hawaiensis

| PRJNA324127 | ENA

Time-course embryonic transcriptomes and improved genome annotation for the amphipod crustacean Parhyale Hawaiensis

Project description:We performed RNA-Seq across multiple time points of development (stages 13, 19, 21, 23) in Parhyale hawaiensis and generated an improved genome annotation.

2022-05-25 | GSE202252 | GEO

Parhyale hawaiensis

Project description:Animal transcriptomes to advance sonogenetic tools: Parhyale hawaiensis

| PRJNA799616 | ENA

Identification and classification of cis-regulatory elements in the amphipod crustacean Parhyale hawaiensis

Project description:Here, we present new functional genomic resources for the amphipod crustacean Parhyale hawaiensis, facilitating the exploration of gene regulatory evolution using this emerging research organism. We use Omni-ATAC-Seq, an improved form of the Assay for Transposase-Accessible Chromatin coupled with next-generation sequencing (ATAC-Seq), to identify accessible chromatin genome-wide across a broad time course of Parhyale embryonic development. This time course encompasses many major morphological events, including segmentation, body regionalization, gut morphogenesis, and limb development. In addition, we use short- and long-read RNA-Seq to generate an improved Parhyale genome annotation, enabling deeper classification of identified regulatory elements. We leverage a variety of bioinformatic tools to discover differential accessibility, predict nucleosome positioning, infer transcription factor binding, cluster peaks based on accessibility dynamics, classify biological functions, and correlate gene expression with accessibility.

2022-05-25 | GSE197886 | GEO

Parhyale hawaiensis

Project description:The maternal transcriptome of the crustacean Parhyale hawaiensis is inherited asymmetrically to invariant cell lineages of the ectoderm and mesoderm [late_vs_early_embryonic]

| PRJNA178396 | ENA

Parhyale hawaiensis

Project description:The maternal transcriptome of the crustacean Parhyale hawaiensis is inherited asymmetrically to invariant cell lineages of the ectoderm and mesoderm [rest_8cell_embryonic_vs_ectoderm]

| PRJNA178397 | ENA

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