Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Butyrivibrio proteoclasticus strain:p18

ABSTRACT: Butyrivibrio proteoclasticus P18 genome sequencing

PROVIDER: PRJNA303298 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR4169736_1.fastq.gz	Fastqsanger.gz
	SRR4169736_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Butyrivibrio proteoclasticus FD2007

Project description:Butyrivibrio proteoclasticus FD2007 Genome sequencing and assembly

| PRJNA223016 | ENA

Butyrivibrio proteoclasticus P6B7

Project description:Butyrivibrio proteoclasticus P6B7 Genome sequencing and assembly

| PRJNA223495 | ENA

Butyrivibrio hungatei MB2003 and Butyrivibrio proteoclasticus B316T grown in mono- and co-cultures on xylan or pectin

Project description:Rumen bacterial species belonging to the genera Butyrivibrio are important degraders of plant polysaccharides, particularly hemicelluloses (arabinoxylans) and pectin. Currently, four distinct species are recognized which have very similar substrate utilization profiles, but little is known about how these microorganisms are able to co-exist in the rumen. To investigate this question, Butyrivibrio hungatei MB2003 and Butyrivibrio proteoclasticus B316T were grown alone or in co-culture on the insoluble substrates, xylan or pectin, and their growth, release of sugars, fermentation end products and transcriptomes were examined. In single cultures, B316T was able to degrade and grow well on xylan and pectin, while MB2003 was unable to utilize either of these insoluble substrates to support significant growth. Co-cultures of B316T grown with MB2003 revealed that MB2003 showed almost equivalent growth to B316T when either xylan or pectin were supplied as substrates. The effect of co-culture on the transcriptomes of B316T and MB2003 was very marked; B316T transcription was largely unaffected by the presence MB2003, but MB2003 expressed a wide range of genes encoding carbohydrate degradation/metabolism and oligosaccharide transport/assimilation in order to compete with B316T for the released sugars. These results suggest that B316T has a role as an initiator of the primary solubilization of xylan and pectin, while MB2003 competes effectively as a scavenger for the released soluble sugars to enable its growth and maintenance in the rumen.

2018-09-27 | GSE120544 | GEO

Project description:Butyrivibrio proteoclasticus P18

| PRJEB17436 | ENA

Butyrivibrio proteoclasticus

Project description:Butyrivibrio proteoclasticum overview

| PRJNA36879 | ENA

Butyrivibrio hungatei MB2003 and Butyrivibrio proteoclasticus B316T grown in mono- and co-cultures on xylan or pectin

Project description:Butyrivibrio hungatei MB2003 and Butyrivibrio proteoclasticus B316T grown in mono- and co-cultures on xylan or pectin

| PRJNA493497 | ENA

The Cytosolic Oligosaccharide-Degrading Proteome of Butyrivibrio Proteoclasticus.

Project description:The growth and productivity of ruminants depends on a complex microbial community found in their fore-stomach (rumen), which is able to breakdown plant polysaccharides and ferment the released sugars. Butyrivibrio proteoclasticus B316T is a Gram-positive polysaccharide-degrading, butyrate-producing bacterium that is present at high numbers in the rumen of animals consuming pasture or grass silage based diets. B316T is one of a small number of rumen fibrolytic microbes capable of efficiently degrading and utilizing xylan, as well as being capable of utilizing arabinose, xylose, pectin and starch. We have therefore carried out a proteomic analysis of B316T to identify intracellular enzymes that are implicated in the metabolism of internalized xylan. Three hundred and ninety four proteins were identified including enzymes that have potential to metabolize assimilated products of extracellular xylan digestion. Identified enzymes included arabinosidases, esterases, an endoxylanase, and β-xylosidase. The presence of intracellular debranching enzymes indicated that some hemicellulosic side-chains may not be removed until oligosaccharides liberated by extracellular digestion have been assimilated by the cells. The results support a model of extracellular digestion of hemicellulose to oligosaccharides that are then transported to the cytoplasm for further digestion by intracellular enzymes.

| S-EPMC5217386 | biostudies-literature

Caloramator proteoclasticus DSM 10124

Project description:Caloramator proteoclasticus DSM 10124 Genome sequencing

| PRJNA245648 | ENA

Lysobacter soli strain:P18

Project description:Lysobacter soli strain:P18 Genome sequencing

| PRJNA1177803 | ENA

Pasteurella multocida strain:P18

Project description:Pasteurella multocida strain:P18 Genome sequencing

| PRJNA896745 | ENA