Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Insect gut metagenome

ABSTRACT: Study of Apis mellifera and Bombus gut microbiota targeted loci

PROVIDER: PRJNA305910 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3181580.fastq.gz	Fastqsanger.gz
	SRR3181590.fastq.gz	Fastqsanger.gz
	SRR3181600.fastq.gz	Fastqsanger.gz
	SRR3181610.fastq.gz	Fastqsanger.gz
	SRR3181620.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 221

Similar Datasets

Metaproteomics-based exploration of Apis mellifera ligustica bee gut microbiota

Project description:Explorative description of the gut microbiota of Apis mellifera ligustica. the study aims at describing the diverse fractions of the microbial community including bacteria, fungi, unicellular parasites

2024-06-16 | PXD043896 | Pride

insect gut metagenome

Project description:Gut microbial community of Apis mellifera Targeted Locus (Loci)

| PRJNA260024 | ENA

insect gut

Project description:Fungal Gut Microbiome of Bombus terrestris, Bombus niveatus niveatus, Bombus niveatus vorticosus, and Apis mellifera Raw sequence reads

| PRJNA953027 | ENA

MiRNAs in the genomes of Bombus terrestris and Bombus impatiens

Project description:Our aims in this study were: 1) to identify the miRNAs of the bumble bees Bombus terrestris and B. impatiens; 2) to compare the total numbers of miRNAs between both bumble bee species and between them and the honey bee, Apis mellifera; and 3) to test whether the sequences and expression patterns of miRNAs were conserved between species. To investigate each of these aims we used miRNA-seq (deep sequencing of miRNA-enriched libraries) in B. terrestris, and bioinformatics prediction programs to identify miRNAs in both Bombus species. We identified 131 miRNAs in B. terrestris, and 114 in B. impatiens; of these, 17 were new miRNAs that had not previously been sequenced in any species. We found a striking level of difference in the miRNAs present between Bombus and A. mellifera, with 103 miRNAs in A. mellifera not being present in the genomes of the two bumble bees. miRNA profiles of Bombus terrestris at two developmental stages in larvae. This submission represents 'Bombus terrestris' component of study.

2015-03-06 | E-GEOD-64512 | biostudies-arrayexpress

MiRNAs in the genomes of Bombus terrestris and Bombus impatiens

2015-03-06 | GSE64512 | GEO

insect gut metagenome

Project description:Cockroach gut microbiota Targeted Locus (Loci)

| PRJNA227172 | ENA

Proteomics of anatomical sections of the gut of Nosema-infected Western honey bee (Apis mellifera) reveals different early responses to Nosema spp. isolates

Project description:We aim to evaluate the effects of four Nosema spores’ isolates, (i) and (ii) N. ceranae isolated from A. mellifera hosts from two different geographical origins, (iii) N. ceranae from A. cerana host and (iv) N. apis from A. mellifera, on the A. mellifera on gut proteomics at the early stage of infection. To dissect the molecular mechanism responsible of the susceptibility of A. mellifera to Nosema, we investigated by high-resolution proteomics (LC-ESI-MS/MS) and differential label-free quantification of proteins (LFQ) the molecular cross-talk existing between different species and isolates of N. apis and N. ceranae, and the targetted gut tissue of A. mellifera. To reach the objectives of this study, we performed a bottom-up proteomic analysis on the different anatomical sections of the gut tissue (esophagus, crop, midgut, ileum and rectum) at an early stage of the exposition to Nosema spores (4 days). Then, we focused on the midgut, the region targeted by Nosema sposres for germination and, as we found out, the second region with the highest load of Nosema proteins, after the rectum, to perform differential quantitative proteomic analyses and acquire series of up- and down-regulated proteins. We discussed the different pathways observed to be impacted by different Nosema species and isolates with a main focus on the deregulated metabolic and response to stimuli processes.

2020-11-25 | PXD021848 | Pride

Apis mellifera

Project description:Apis mellifera Targeted loci

| PRJNA429464 | ENA

insect gut metagenome

Project description:Apis mellifera ligustica midgut microbial diversity

| PRJNA260993 | ENA

Brain proteome of honeybee (Apis mellifera)

Project description:This project analysis brain proteome of honeybee (Apis mellifera). We aim to find out how gut microbiota affect brain functions.

2020-11-02 | PXD022304 |

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data