Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Fungus metagenome

ABSTRACT: natural Ophiocordyceps sinensis and its microhabitats soil samples Metagenome

PROVIDER: PRJNA307049 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3064500.fastq.gz	Fastqsanger.gz
	SRR3064501.fastq.gz	Fastqsanger.gz
	SRR3064502.fastq.gz	Fastqsanger.gz
	SRR3064503.fastq.gz	Fastqsanger.gz
	SRR3064494.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 15

Similar Datasets

fungus metagenome

Project description:Ophiocordyceps sinensis raw sequence reads

| PRJNA310032 | ENA

terrestrial metagenome

Project description:Tibetan Plateau soil and Ophiocordyceps sinensis Metagenome

| PRJNA272348 | ENA

mRNA-seq and miRNA-seq profiling analyses reveal molecular mechanisms regulating induction of fruiting bodies in Ophiocordyceps Sinensis [miRNA-seq dataset]

Project description:Ophiocordyceps sinensis (Berk.) Sacc., a complex of larval carcass (sclerotium) and stroma formed by the fungus of Hirsutella sinensis infecting Hepialidae insect larvae, whose fruiting body is also the main fungal structure used for taxonomic identification. However, the induction of fruiting body is still inefficient and the high cost resulting in the large-scale artificial cultivation of this fungus has been unsuccessful in China.In this study,important factors and target genes associated with the fruiting body induction during the development of O. sinensis were identified, providing a basic molecular mechanism for facilitating the large-scale artificial cultivation of O. sinensis.

2021-06-30 | GSE160505 | GEO

mRNA-seq and miRNA-seq profiling analyses reveal molecular mechanisms regulating induction of fruiting bodies in Ophiocordyceps Sinensis [mRNA-seq dataset]

2021-06-30 | GSE160504 | GEO

The preceding root system drives the rhizosphere microbiome

Project description:Background: The soil environment is responsible for sustaining most terrestrial plant life on earth, yet we know surprisingly little about the important functions carried out by diverse microbial communities in soil. Soil microbes that inhabit the channels of decaying root systems, the detritusphere, are likely to be essential for plant growth and health, as these channels are the preferred locations of new root growth. Understanding the microbial metagenome of the detritusphere and how it responds to agricultural management such as crop rotations and soil tillage will be vital for improving global food production. Methods: The rhizosphere soils of wheat and chickpea growing under + and - decaying root were collected for metagenomics sequencing. A gene catalogue was established by de novo assembling metagenomic sequencing. Genes abundance was compared between bulk soil and rhizosphere soils under different treatments. Conclusions: The study describes the diversity and functional capacity of a high-quality soil microbial metagenome. The results demonstrate the contribution of the microbiome from decaying root in determining the metagenome of developing root systems, which is fundamental to plant growth, since roots preferentially inhabit previous root channels. Modifications in root microbial function through soil management, can ultimately govern plant health, productivity and food security.

2020-03-06 | GSE146427 | GEO

sediment metagenome

Project description:Sediment microhabitats Metagenome

| PRJNA236468 | ENA

Project description:Ophiocordyceps Sinensis

| PRJNA1169795 | ENA

Project description:Ophiocordyceps sinensis

| PRJNA1047261 | ENA

Project description:Fungal Community Composition in Natural Habitat of Ophiocordyceps sinensis

| PRJNA609607 | ENA

fungus metagenome

Project description:endophytic fungus metagenome Raw sequence reads of Aquilaria sinensis