Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Hydroides elegans strain:CA01

ABSTRACT: Hydroides elegans strain:CA01 Genome sequencing and assembly

PROVIDER: PRJNA307290 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3077990_1.fastq.gz	Fastqsanger.gz
	SRR3077990_2.fastq.gz	Fastqsanger.gz
	SRR3077991_1.fastq.gz	Fastqsanger.gz
	SRR3077991_2.fastq.gz	Fastqsanger.gz
	LQRL01.dat.gz	Other

Items per page:

1 - 5 of 5

Similar Datasets

Hydroides elegans

Project description:Hydroides elegans overview

| PRJNA307361 | ENA

Hydroides elegans

Project description:Hydroides elegans Transcriptome

| PRJNA234282 | ENA

Hydroides elegans

Project description:Hydroides elegans Transcriptome or Gene expression

| PRJNA307200 | ENA

RNA-seq profiles of 5 differentially RNAi sensitive wild C. elegans strains in control and embryonic RNAi conditions

Project description:This dataset addresses two phenomena affected by reference strain bias in model organism research, specifically in the nematode C. elegans. I) C. elegans is the leading system for research into RNA interference (RNAi); this research has been conducted exclusively in the reference strain. However, sensitivity to RNAi is remarkably diverse across wild-type strains. Here, we used RNA sequencing to evaluate the transcriptional response of the reference strain and four other strains to RNAi by transcriptionally profiling these strains in three conditions: exogenous RNAi targeting germline-expressed genes 1) par-1 and 2) pos-1, and 3) the control condition. II) Gene expression quantification in non-reference strains relies on successful alignment of DNA reads to the reference genome, but high sequence divergence can lead to mapping failure. Here, we used this RNA-seq dataset to characterize the extent to which poor DNA genome assembly limits expression quantification inferences.

2023-03-23 | GSE190803 | GEO

C. elegans gonad-ablated (Z1-,Z4-) animals versus intact animals, N2 strain

Project description:Transcriptional profiling of C. elegans germline-ablated worms versus unablated intact animals, N2 strain

2013-03-01 | GSE44703 | GEO

C. elegans germline-ablated (Z2-, Z3-) animals versus intact animals, N2 strain

Project description:Transcriptional profiling of C. elegans germline-ablated worms versus unablated intact animals, N2 strain

2013-03-01 | GSE44702 | GEO

Expression data from Caenorhabditis elegans fed with the bacterial strain Bifidobacterium animalis sbsp. lactis CECT 8145

Project description:Modulation of gut microbiota through probiotic supplementation is an interesting strategy to prevent obesity We use microarrays to study the global genome expression of C. elegans fed with the probiotic strain Bifidobacterium animalis sbsp. lactis CECT 8145

2015-11-22 | GSE63531 | GEO

Caenorhabditis elegans strain:CL4176

Project description:Caenorhabditis elegans strain:CL4176 Genome sequencing and assembly

| PRJNA976960 | ENA

Caenorhabditis elegans strain:BY250

Project description:Caenorhabditis elegans strain:BY250 Genome sequencing and assembly

| PRJNA627737 | ENA

Caenorhabditis elegans strain:DL226

Project description:Caenorhabditis elegans strain:DL226 Genome sequencing and assembly

| PRJNA819174 | ENA