Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Flavobacterium columnare strain:94-081

ABSTRACT: Complete genome sequencing of Flavobacterium columnare genomovar II strain 94-081

PROVIDER: PRJNA308000 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Proteomic analysis of the fish pathogen Flavobacterium columnare

Project description:Clinical Flavobacterium columnare ATCC 49512 was grown on Flavobacterium columnare growth medium (FCGM). Bacteria from four colonies at mid-exponential phase were harvested, total proteins were isolated, and identified using 2-DE MALDI TOF/TOF MS and 2-D LC ESI MS/MS analyses. The MS/MS spectra for all peptides were analyzed using sequest algorithm

2016-03-11 | PRD000810 | Pride

Gene expression analysis between planktonic and biofilm states of Flavobacterium columnare

Project description:Flavobacterium columnare, the causative agent of columnaris disease causes substantial mortality worldwide in numerous freshwater finfish species. Due to its global significance and impact on the aquaculture industry continual efforts to better understand basic mechanisms that contribute to disease are urgently needed. F. columnare naturally occurs in a planktonic, free living state where it can survive for long periods of time, even in the absence of nutrients. In contrast, F. columnare also possesses the ability to form biofilms, broadly defined as surface bound microbial communities inhabiting an organic matrix composed of autogenously derived extracellular polymeric substances. The advantages of adopting this life stage are not completely clear for F. columnare, but biofilm formation could increase virulence by offering protection from desiccation, augment resistance to antimicrobials, improve nutrient acquisition, and protection against other bacteria. To examine gene expression between F. columnare planktonic cells and biofilms, we conducted a study where both phases were grown with and without stimulation and then sampled for RNA sequencing.

2018-10-16 | GSE109937 | GEO

Flavobacterium columnare strain:Pf1

Project description:Flavobacterium columnare Pf1, complete genome

| PRJNA321617 | ENA

Gene expression profiling of catfish after treatment with Flavobacterium columnare DnaK protein

Project description:Catfish farming remains number one among U.S. aquaculture production. Flavobacterium columnare, the causative agent of columnaris disease, produces substantial mortality during the production of freshwater farmed finfish species. F. columnare is ubiquitous in the aquatic environment, and outbreaks of disease are often triggered during the spring and summer months of the catfish production cycle. As food fish production continues to increase, the frequency of columnaris disease will only continue to rise within the aquaculture industry and thus new preventative measures will be required. Vaccination against different fish pathogens has proven to be an effective disease management practice within the aquaculture industry. To evaluate the immunological effect of bath immunization on catfish with a recombinant F. columnare DNAk protein vaccine, we performed RNA sequencing on skin samples from control and rDNAK immunized catfish at different time intervals. We evaluated the different gene expression patterns between the groups with a focus on identifying differences in innate and adaptive immune function.

2019-06-20 | GSE121116 | GEO

Flavobacterium columnare

Project description:Flavobacterium columnare overview

| PRJNA67833 | ENA

Genome Sequence of the Fish Pathogen Flavobacterium columnare Genomovar II Strain 94-081.

Project description:Flavobacterium columnare causes columnaris disease in fresh and brackish water worldwide. F. columnare strain 94-081 was isolated from a diseased channel catfish in 1994; its genome sequence is the first completed genomovar II sequence.

| S-EPMC4882947 | biostudies-literature

Flavobacterium columnare

Project description:Flavobacterium columnare Genome sequencing

| PRJNA1082490 | ENA

Flavobacterium columnare

Project description:Flavobacterium columnare Genome sequencing

| PRJNA358757 | ENA

Flavobacterium columnare

Project description:Flavobacterium columnare Genome sequencing and assembly

| PRJNA360885 | ENA

Flavobacterium columnare

Project description:Flavobacterium columnare Transcriptome or Gene expression