Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Drosophila melanogaster

ABSTRACT: Genome-wide distribution of proteins Pita, ZIPIC, Zw5 in Drosophila embryos

PROVIDER: PRJNA309199 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3109310.fastq.gz	Fastqsanger.gz
	SRR3109311.fastq.gz	Fastqsanger.gz
	SRR3109312.fastq.gz	Fastqsanger.gz
	SRR3109313.fastq.gz	Fastqsanger.gz
	SRR3109314.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Drosophila melanogaster

Project description:Genome-wide binding of two new insulator-like proteins Pita and ZIPIC

| PRJNA236229 | ENA

Drosophila melanogaster

Project description:Distribution of Drosophila insulator proteins DREF in Drosophila Kc167 cells

| PRJNA171353 | ENA

Mechanism and functional role of the interaction between CP190 and the architectural protein Pita in Drosophila melanogaster

Project description:The architectural protein Pita is critical for Drosophila embryogenesis and predominantly binds to gene promoters and insulators. In particular, Pita is involved in the organization of boundaries between regulatory domains, controlled by the expression of three hox genes in the Bithorax complex (BX-C). The best-characterized partner for Pita is the BTB/POZ-domain containing protein CP190. Here, we precisely mapped two unstructured regions of Pita that interact with the BTB domain of CP190. The deletion of the CP190-interacting regions did not significantly affect the binding of the mutant Pita protein to most chromatin sites. The expression of the mutant protein completely complemented the null pita mutation. However, the mutant Pita protein does not support the ability of multimerized Pita sites to prevent cross-talk between the iab-6 and iab-7 regulatory domains that activate the expression of Abdominal-B (Abd-B), one of the genes in the BX-C. The recruitment of the Pita region and the interaction with CP190 and the polytene chromosomes of larvae induces the formation of a new interband, which is a consequence of the formation of open chromatin in this region. These results suggested that the interaction with CP190 is required for the primary Pita activities, but other architectural proteins may also recruit CP190 in flies expressing only the mutant Pita protein.

2020-11-30 | GSE160007 | GEO

Drosophila melanogaster

Project description:Genome-Wide Yan Chromatin Occupancy in Drosophila Embryos

| PRJNA148081 | ENA

Genome wide distribution of dH1K27me2 in Wild Type Drosophila melanogaster S2 cells

Project description:Genome wide distribution of dH1K27me2 in Wild Type Drosophila melanogaster S2 cells

2022-08-02 | GSE167018 | GEO

Drosophila melanogaster

Project description:Distribution of Drosophila insulator proteins during interphase and mitosis

| PRJNA147079 | ENA

Genome-wide distribution of proteins ZAF1 and dCTCF in Drosophila embryos

Project description:Genome-wide distribution of proteins ZAF1 and dCTCF in Drosophila embryos

| PRJNA562508 | ENA

Genome wide distribution of gammaH2AvD in Wild Type and RNAi dH1 Drosophila melanogaster S2 cells

Project description:Genome wide distribution of gammaH2AvD in Wild Type and RNAi dH1 Drosophila melanogaster S2 cells

2020-07-01 | GSE76912 | GEO

Drosophila melanogaster

Project description:Genome-wide localization of Trf2 and TBP in Drosophila embryos

| PRJNA226265 | ENA

Drosophila melanogaster

Project description:Distribution of Drosophila insulator proteins after ecdysone treatment in Kc cells

| PRJNA154553 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data