Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Vibrio

ABSTRACT: Environmental water samples

PROVIDER: PRJNA309925 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3156052_1.fastq.gz	Fastqsanger.gz
	SRR3156052_2.fastq.gz	Fastqsanger.gz
	SRR3156054_1.fastq.gz	Fastqsanger.gz
	SRR3156054_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

California Vibrio cholerae CGH

Project description:Environmental isolates of Vibrio cholerae from California coastal water compared to reference strain N16961. A genotyping experiment design type classifies an individual or group of individuals on the basis of alleles, haplotypes, SNP's. Keywords: genotyping_design; array CGH

2007-07-17 | GSE8499 | GEO

Environmental Water Samples

Project description:Environmental Water Samples Metagenome

| PRJNA961032 | ENA

Comparative genomic hybridization of Vibrio cholerae from California coastal water compared to reference strain N16961

Project description:Environmental isolates of Vibrio cholerae from California coastal water compared to reference strain N16961.

2007-05-23 | E-SMDB-4063 | biostudies-arrayexpress

Water environmental samples

Project description:Water environmental samples Raw sequence reads

| PRJNA941381 | ENA

marine metagenome

Project description:Marine Water Column Samples Targeted loci environmental

| PRJNA284404 | ENA

Meramec river water samples

Project description:Meramec river water samples Targeted loci environmental

| PRJNA775811 | ENA

Project description:Water and Sediment samples Targeted loci environmental

| PRJNA355887 | ENA

RNA-Seq of Vibrio alginolyticus: Vibrio alginolyticus 18672

Project description:RNA-seq analysis demonstrated that VqsA (18672) controls ~275 genes' expression in V. alginolyticus. Collectively, our data established that VqsA plays essential roles in QS regulation and may facilitate the illumination of the mechanisms bacterial cells sense environmental signals and integrate them into coordinated QS responses.

2021-12-06 | GSE125760 | GEO

Identification of differentially expressed Oncorhynchus mykiss microRNA in plasma, mucus, and water following acute stress using high throughput sequencing.

Project description:Circulating plasma microRNAs (miRNAs) are well established as biomarkers of several diseases in humans and have recently been used as indicators of environmental exposures in fish. However, the role of plasma miRNAs in regulating acute stress responses in fish is largely unknown. Tissue and plasma miRNAs have recently been associated with excreted miRNAs in humans however external miRNAs have never been measured in fish. The objective of this study was to characterize the plasma miRNA profile in response to acute stress in rainbow trout (Oncorhynchus mykiss), as well as miRNA profiles in novel external samples, (fish epidermal mucus and the surrounding water). RNA was extracted and sequenced from plasma, mucus, and water collected from rainbow trout and their surrounding environment prior to and one-hour following a three-minute air exposure, a known inducer of an acute stress response in fish. Following small RNA-Seq and pathway analysis, we identified differentially expressed plasma miRNAs that targeted biosynthetic, degradation, and metabolic pathways. We successfully isolated miRNA from trout mucus and the surrounding water and detected differences in miRNA expression one-hour post air stress. The altered miRNA profiles in mucus and water were unique to the altered plasma miRNA profile, indicating that the plasma miRNA response was not associated with or immediately reflected in external samples. This research expands our understanding of the role of plasma miRNA in the acute stress response of fish and is the first study to report on the successful isolation and profiling of miRNA from fish mucus and water samples. Measurements of miRNA from plasma, mucus, and water can be further studied and have the potential to be applied in environmental monitoring as non-lethal indicators of acute stress in fish.

2020-12-28 | GSE151138 | GEO

pond metagenome

Project description:Guangdong aquaculture pond water samples Targeted loci environmental

| PRJNA357316 | ENA