Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Schizothorax prenanti

ABSTRACT: Schizothorax prenanti transcriptome

PROVIDER: PRJNA310818 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3144597_1.fastq.gz	Fastqsanger.gz
	SRR3144597_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Schizothorax prenanti

Project description:Schizothorax prenanti overview

| PRJNA294812 | ENA

Schizothorax prenanti

Project description:Schizothorax prenanti Transcriptome or Gene expression

| PRJNA560327 | ENA

Schizothorax prenanti

Project description:Schizothorax prenanti Transcriptome or Gene expression

| PRJNA320025 | ENA

Schizothorax prenanti

Project description:Schizothorax prenanti Raw sequence reads-NGS

| PRJNA645984 | ENA

Schizothorax prenanti

Project description:Schizothorax prenanti liver SGS Raw sequence reads

| PRJNA563979 | ENA

Project description:Schizothorax prenanti Transcriptome

| PRJNA534375 | ENA

Schizothorax prenanti

Project description:Prenant schizothoracin spleen transcriptome

| PRJNA383672 | ENA

Schizothorax prenanti

Project description:Prenant’s schizothoracin spleen transcriptome raw sequence reads

| PRJNA294732 | ENA

Schizothorax kozlovi, Schizothorax waltoni, Schizothorax oconnori, Schizothorax macropogon, Oxygymnocypris stewartii, Poropuntius huangchuchieni

Project description:Schizothorax kozlovi, Schizothorax waltoni, Schizothorax oconnori, Schizothorax macropogon, Oxygymnocypris stewartii, Poropuntius huangchuchieni

| PRJNA526402 | ENA

Molecular characterization and expression analysis of Hsp90 in Schizothorax prenanti.

Project description:Aquatic animals suffer from various environmental stresses because the aquatic environment is a very complex system. To monitor the health status of fish, Hsp90 a potential early warning marker was determined in Schizothorax prenanti after infection with a bacterium. In this study, we cloned Hsp90 from S. prenanti for the first time. The full-length cDNA sequence of SpHsp90 was 2663 bp, contains an open reading frame of 2181 bp, and has a gene encoding 726 amino acids, an estimated molecular mass of 83.38 kDa, and a theoretical isoelectric point of 4.91. The SpHsp90 amino acid sequence has five conserved HSP90 family signatures and shares 87.0-95.5 % identity with other vertebrates. Phylogenetic analysis and structure comparison indicated that SpHsp90 should be a β isoform of the HSP90 family. SpHsp90 was ubiquitously expressed in all examined tissues, and the highest level of expression was in the kidney. After Streptococcus agalactiae infection, the level of SpHsp90 expression had significant changes (P < 0.05) in the hepatopancreas, spleen, kidney, and blood. The expression increased to the highest level at 6 h in the blood and at 24 h in the hepatopancreas, spleen, and kidney. The results suggested that the SpHsp90 gene could be induced by S. agalactiae in S. prenanti and that SpHsp90 may be involved in resistance to bacterial infection and provide an early warning information. The kidney is the most suitable for detecting SpHsp90 after bacterial infection.

| S-EPMC5083668 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data