Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Danio rerio

ABSTRACT: Trancriptome study of zebrafish mutant fn10a

PROVIDER: PRJNA312615 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3179600_1.fastq.gz	Fastqsanger.gz
	SRR3179600_2.fastq.gz	Fastqsanger.gz
	SRR3179610_1.fastq.gz	Fastqsanger.gz
	SRR3179610_2.fastq.gz	Fastqsanger.gz
	SRR3179601_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 40

Similar Datasets

Danio rerio

Project description:Trancriptome Kinetics of Arsenic-induced Adaptive Response in Zebrafish Liver.

| PRJNA93067 | ENA

Danio rerio

Project description:Ikk2 regulates cytokinesis during vertebrate development (Trancriptome profiling from the wild-type and Ikk2 maternal-zygotic mutant zebrafish)

| PRJNA356508 | ENA

Role of the Exon Junction Complex in Danio rerio

Project description:The exon junction complex (EJC) is composed of three core proteins Rbm8a, Magoh and Eif4a3 and is thought to play a role in several post-transcriptional processes. In this study we focus on understanding the role of EJC in zebrafish development. We identified transcriptome-wide binding sites of EJC in zebrafish via RNA:protein immunoprecipitation followed by deep sequencing (RIP-Seq). We find that, as in human cells, zebrafish EJC is deposited about 24 nts upstream of exon-exon junctions. We also identify transcripts regulated by Rbm8a and Magoh in zebrafish embryos using whole embryo RNA-seq from rbm8a mutant, magoh mutant and wild-type sibling embryos. This study shows that nonsense mediated mRNA decay is dysregulated in zebrafish EJC mutants.

2019-07-30 | GSE135019 | GEO

Danio rerio

Project description:Zebrafish presenillin1 mutant transcriptome

| PRJNA263170 | ENA

Danio rerio

Project description:Zebrafish 24hpf mutant sk8 gene expression

| PRJNA111131 | ENA

Danio rerio

Project description:Zebrafish Hypoxia study Heart array

| PRJNA95495 | ENA

Danio rerio

Project description:Gene expression profiles of uhrf1 mutant zebrafish