Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Salvelinus namaycush

ABSTRACT: Salvelinus namaycush Raw sequence reads

PROVIDER: PRJNA313908 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3212180.fastq.gz	Fastqsanger.gz
	SRR3212190.fastq.gz	Fastqsanger.gz
	SRR3212200.fastq.gz	Fastqsanger.gz
	SRR3212210.fastq.gz	Fastqsanger.gz
	SRR3212220.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 321

Similar Datasets

Salvelinus namaycush

Project description:Salvelinus namaycush Raw sequence reads

| PRJNA359354 | ENA

Salvelinus namaycush

Project description:Salvelinus namaycush Raw sequence reads

| PRJNA1077361 | ENA

Salvelinus namaycush

Project description:Salvelinus namaycush overview

| PRJNA83945 | ENA

Salvelinus namaycush

Project description:Salvelinus namaycush Transcriptome and RNASeq

| PRJNA233960 | ENA

Salvelinus namaycush

Project description:Salvelinus namaycush Transcriptome or Gene expression

| PRJNA187505 | ENA

Salvelinus namaycush isolate:Seneca

Project description:Salvelinus namaycush isolate:Seneca Genome sequencing and assembly

| PRJNA682269 | ENA

Salvelinus namaycush

Project description:A genetic basis for the phenotypic differentiation between siscowet and lean lake trout (Salvelinus namaycush)

| PRJNA79487 | ENA

Proteomic analysis of the lake trout (Salvelinus namaycush)

Project description:Lake trout are used as bioindicators for toxics exposure in the Great Lakes ecosystem. However, there is no knowledge about lake trout proteome. Here we performed the first lake trout (Salvelinus namaycush) liver proteomics and searched the databases against (NCBI and UniProtKB) Salvelinus, Salmonidae, Actinopterygii and the more distant Danio rerio. In the NCBI search, we identified 4371 proteins in 1252 clusters. From these proteins, we found 2175 proteins in Actinopterygii 1253 in Salmonidae, 69 in Salvelinus and 901 in Danio rerio NCBI searches. In the UniProtKB search, we identified 2630 proteins in 1100 clusters. From these proteins, we found 317 in Actinopterygii, 1653 in Salmonidae, 37 in Salvelinus and 666 in Danio rerio UniProtKB searches. A similar outcome was also obtained from a technical replicate experiment. A large number of lake trout liver proteins were not in any Salvelinus databases, suggesting that lake trout liver proteins have homologues to some proteins from the Salmonidae family and Actinopterygii class, as well as to the species Danio rerio, a more highly studied Cypriniformes fish. Therefore, our study not only builds the first comprehensive lake trout protein database, but also establishes protein homology-based evolutionary relationships between the fish within their family and class, as well as distant-related fish (lake trout and zebrafish). In addition, this study opens the possibility of identifying evolutionary relationships (i.e. adaptive mutations) between various groups (i.e. zebrafish, Salmonidae, Salvelinus and lake trout) through evolutionary proteomics

2019-10-10 | PXD011924 | Pride

Salvelinus alpinus

Project description:Salvelinus alpinus Raw sequence reads

| PRJNA413202 | ENA

Salvelinus alpinus

Project description:Salvelinus alpinus Raw sequence reads

| PRJNA686381 | ENA