Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Food metagenome

ABSTRACT: sourdough Metagenome

PROVIDER: PRJNA314479 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3225910.fastq.gz	Fastqsanger.gz
	SRR3225970.fastq.gz	Fastqsanger.gz
	SRR3226030.fastq.gz	Fastqsanger.gz
	SRR3225961.fastq.gz	Fastqsanger.gz
	SRR3225971.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

food metagenome

Project description:Sourdough and ingredients Targeted loci environmental

| PRJNA284752 | ENA

food fermentation metagenome

Project description:6 batches of sourdough community dynamics

| PRJDB11555 | ENA

food metagenome

Project description:Lactic acid bacteria Genome sequencing isolated from quinoa sourdough

| PRJNA609679 | ENA

sourdough metagenome

Project description:sourdough metagenome Metagenome

| PRJNA931774 | ENA

Food metagenome

Project description:Dynamics of microbial ecology and aromatic composition during the elaboration of panettones using sourdough-isolated strains as starter cultures

| PRJNA1013384 | ENA

Food metagenome

Project description:Dynamics of microbial ecology and aromatic composition during the elaboration of panettones using sourdough-isolated strains as starter cultures - ITS

| PRJNA1013494 | ENA

Global transcriptome analysis of Lactobacillus reuteri in sourdough fermentation.

Project description:In this study, we investigated the transcriptional response of the human isolate L. reuteri ATCC 55730 during sourdough fermentation by using whole-genome microarrays. Significant changes of mRNA levels were found for 101 genes involved in diverse cellular processes, e.g., carbohydrate and energy metabolism, cell envelope biosynthesis, exopolysaccharide production, stress responses, signal transduction and cobalamin biosynthesis. Our results evidence extensive changes of the organism’s gene expression to the growth in sourdough as compared to the growth in chemically defined medium, and thus allowed us to uncover pathways involved in the adaptation of L. reuteri to the ecological niche of sourdough. An impact of several genes of L. reuteri for effective growth in sourdough was shown by implementation of mutant strains in sourdough fermentation. This study contributes to the understanding of the molecular fundamentals of L. reuteri’s ecological competitiveness, and provides a basis for further exploration of genetic traits involved in adaptation to the food and/or intestinal environment. Keywords: environment-specific gene expression, sourdough fermentation, chemically defined medium, dye swap

2008-02-13 | GSE10495 | GEO

Analysis of natural wheat and spelt sourdough ecosystem during a 10-day spontaneous laboratory fermentation

Project description:This SuperSeries is composed of the following subset Series: GSE15686: Meta-transcriptome analysis of a natural wheat sourdough ecosystem during a 10-day spontaneous laboratory fermentation (I) GSE15691: Meta-transcriptome analysis of a natural spelt sourdough ecosystem during a 10-day spontaneous laboratory fermentation (I) GSE15692: Meta-transcriptome analysis of a natural spelt sourdough ecosystem during a 10-day spontaneous laboratory fermentation (II) GSE15693: Meta-transcriptome analysis of a natural wheat sourdough ecosystem during a 10-day spontaneous laboratory fermentation (II) Refer to individual Series

2010-07-07 | E-GEOD-15803 | biostudies-arrayexpress

food metagenome

Project description:food metagenome Metagenome

| PRJDA72133 | ENA

food metagenome

Project description:food metagenome Metagenome

| PRJNA383471 | ENA