Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Exiguobacterium oxidotolerans strain:N4-1P

ABSTRACT: Exiguobacterium oxidotolerans strain:N4-1P Genome sequencing

PROVIDER: PRJNA314532 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	GCA_002214325.1_sequence_report.txt	Txt

Items per page:

1 - 1 of 1

Similar Datasets

Architecture of thermal adaptation in Exiguobacterium sibiricum strain 255-15: A genome and transcriptome approach

Project description:Several microorganisms have wide temperature growth range and versatility to tolerate large thermal fluctuations in diverse environments. To better understand thermal adaptation of psychrotrophs, Exiguobacterium sibiricum strain 255-15 was used, a psychrotrophic bacterium that grows from -5°C to 39°C. Its genome is approximately 3 Mb in size, has a GC content of 47.7% and includes 2,978 putative protein-encoding genes (CDS). The genome and transcriptome analysis along with the organism's known physiology was used to better understand its thermal adaptation. A total of about 27%, 3.2% and 5.2% of E. sibiricum strain 255-15 CDS spotted on the DNA microarray yielded differentially expressed genes in cells grown at -2.5°C, 10°C and 39°C, respectively, when compared to cells grown at 28°C. The hypothetical and unknown genes represented 10.6%, 0.89% and 2.3% of the CDS differentially expressed when grown at -2.5°C, 10°C and 39°C versus 28°C. The transcriptome analyses showed that E. sibiricum is constitutively adapted to cold temperatures since little differential gene expression was observed at growth temperatures of 10°C and 28°C, but at the extremities of its Arrhenius growth profile, namely -2.5°C and 39°C, much more differential gene expression occurred. The genes that responded were more typically associated with stress response. Keywords: stress response to cold and hot temperatures

2008-02-11 | GSE10133 | GEO

Base-resolution detection of N4-methylcytosine in genomic DNA using 4mC-TAB-seq

Project description:N4-methylcytosine is a major DNA modification integral to restriction-modification (R-M) systems in bacterial genomes. Here we describe 4mC-Tet-Assisted Bisulfite-sequencing (4mC-TAB-seq), a method that accurately and rapidly reveals the genome-wide locations of N4-methylcytosines at single-base resolution. By coupling Tet-mediated oxidation with a modified sodium bisulfite conversion reaction, unmodified cytosines and 5-methylcytosines are read out as thymines, whereas N4-methylcytosines are read out as cytosines revealing their positions throughout the genome. 4mC-TAB-seq

2015-07-11 | E-GEOD-63371 | biostudies-arrayexpress

Pseudomonas aeruginosa strain:YS-1p

Project description:Pseudomonas aeruginosa strain:YS-1p Genome sequencing and assembly

| PRJNA257546 | ENA

Complete Genome Sequence of Exiguobacterium sp. Strain N4-1P, a Psychrophilic Bioemulsifier Producer Isolated from a Cold Marine Environment in North Atlantic Canada.

Project description:Here, we present the complete genome sequence of Exiguobacterium sp. strain N4-1P, a psychrophilic bacterium that produces bioemulsifier, isolated for the first time from petroleum hydrocarbon-contaminated sediment samples from shoreline Newfoundland, Canada. Many strains of the genus Exiguobacterium are extremophiles and have properties of biotechnological interest.

| S-EPMC5668553 | biostudies-literature

Exiguobacterium acetylicum strain:EYLC1

Project description:Exiguobacterium acetylicum strain:EYLC1 Genome sequencing

| PRJNA758738 | ENA

Exiguobacterium oxidotolerans strain:BW26

Project description:Exiguobacterium oxidotolerans strain:BW26 Genome sequencing

| PRJNA309523 | ENA

Exiguobacterium mexicanum strain:MM

Project description:Exiguobacterium mexicanum strain:MM Genome sequencing

| PRJNA1167746 | ENA

Exiguobacterium aurantiacum strain:CX2

Project description:Exiguobacterium aurantiacum strain:CX2 Genome sequencing