Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Caenorhabditis elegans

ABSTRACT: dsRNAs expressed in C. elegans development

PROVIDER: PRJNA315629 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3236170_1.fastq.gz	Fastqsanger.gz
	SRR3236170_2.fastq.gz	Fastqsanger.gz
	SRR3236180_1.fastq.gz	Fastqsanger.gz
	SRR3236180_2.fastq.gz	Fastqsanger.gz
	SRR3236190_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 48

Similar Datasets

Caenorhabditis elegans

Project description:Identification of genes expressed in C. elegans touch receptor neurons

| PRJNA92957 | ENA

Caenorhabditis elegans

Project description:Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags

| PRJNA79387 | ENA

Natural genetic variation on proteome level in Caenorhabditis elegans

Project description:Natural genetic variation is the raw material of evolution and influences disease development and progression. To analyze the effect of the genetic background on protein expression in the nematode C. elegans (Caenorhabditis elegans), the two genetically highly divergent wild-type strains N2 (Bristol) and CB4856 (Hawaii) were compared quantitatively. In total, we quantified 3,238 unique proteins in three independent SILAC (stable isotope labeling by amino acids in cell culture) experiments. The differentially expressed proteins were enriched for genes that function in insulin-signaling and stress response pathways.

2016-03-11 | PXD002010 | Pride

Caenorhabditis elegans

Project description:DNA accessibility profile of three C. elegans tissues during development

| PRJNA131159 | ENA

Caenorhabditis elegans extracellular vesicle

Project description:The nematode Caenorhabditis elegans has evolutionarily conserved EV signaling pathways. In this study, we apply a recently published method for high specificity purification of EVs from C. elegans to carry out target-independent proteomic and RNA analysis of EVs from C. elegans. Our experiments uncovered diverse coding and non-coding RNA transcripts as well as protein cargo types commonly found in human EVs.

2020-08-05 | GSE146973 | GEO

Caenorhabditis elegans

Project description:RNA-seq analysis in C. elegans larval development and heat shock

| PRJNA321853 | ENA

Caenorhabditis elegans

Project description:Extensive oscillatory gene expression during C. elegans larval development [Ribosome footprinting]

| PRJNA230441 | ENA

Caenorhabditis elegans

Project description:RNA-seq analysis of hsf-1 mutant in C. elegans larval development

| PRJNA321851 | ENA

Caenorhabditis elegans

Project description:Use of an activated beta-catenin to identify Wnt/beta-catenin pathway target genes in C. elegans, including a subset of collagen genes expressed in late larval development

| PRJNA223323 | ENA

The embryonic muscle transcriptome of Caenorhabditis elegans

Project description:Background: The force generating mechanism of muscle is evolutionarily ancient; the fundamental structural and functional components of the sarcomere are common to motile animals throughout phylogeny. Recent evidence suggests that the transcription factors that regulate muscle development are also conserved. Thus, a comprehensive description of muscle gene expression in a simple model organism should define a basic muscle transcriptome that is also expressed in animals with more complex body plans. To this end, we have applied Micro-Array Profiling of Caenorhabditis elegans Cells (MAPCeL) to muscle cell populations extracted from developing Caenorhabditis elegans embryos. Results: Fluorescence Activated Cell Sorting (FACS) was used to isolate myo-3::GFP-positive muscle cells, and their cultured derivatives, from dissociated early Caenorhabditis elegans embryos. Microarray analysis identified 6,693 expressed genes, 1,305 of which are enriched in the myo-3::GFP positive cell population relative to the average embryonic cell. The muscle-enriched gene set was validated by comparisons to known muscle markers, independently derived expression data, and GFP reporters in transgenic strains. These results confirm the utility of MAPCeL for cell type-specific expression profiling and reveal that 60% of these transcripts have human homologs. Conclusions: This study provides a comprehensive description of gene expression in developing Caenorhabditis elegans embryonic muscle cells. The finding that over half of these muscle-enriched transcripts encode proteins with human homologs suggests that mutant analysis of these genes in Caenorhabditis elegans could reveal evolutionarily conserved models of muscle gene function with ready application to human muscle pathologies. Keywords: embryonic muscle, myo-3::GFP

2007-07-13 | GSE8462 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data