Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genome sequencing and assembly of environmentally isolated bacteria

PROVIDER: PRJNA317609 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR3343466_subreads.fastq.gz	Fastqsanger.gz
	SRR5478715_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

YerA41, a Yersinia ruckeri bacteriophage: determination of non-sequencable bacteriophage genome and investigation of bacterial response to infection.

Project description:YerA41 is a myoviridae bacteriophage that was originally isolated due its ability to infect Yersinia ruckeri bacteria, the causative agent of enteric redmouth disease of salmonid fish. Several attempts to determine its genomic DNA sequence using traditional and next generation sequencing technologies failed, indicating that the phage genome is modified such way that it is an unsuitable template for PCR amplification and sequencing. To determine the YerA41 genome sequence we isolated RNA from phage-infected Y. ruckeri cells at different time points post-infection, and sequenced it. The host-genome specific reads were substracted and de novo assembly was performed on the unaligned reads.

2020-03-04 | GSE146319 | GEO

Chondria armata

Project description:Environmentally isolated Chondria armata hologenome sequencing and assembly

| PRJNA762367 | ENA

Digenea simplex

Project description:Environmentally isolated Digenea simplex hologenome sequencing and assembly

| PRJNA509898 | ENA

Project description:Environmentally isolated Portieria hornemannii hologenome sequencing

| PRJNA1012344 | ENA

Project description:bile isolated bacteria Genome sequencing and assembly

| PRJNA763811 | ENA

Microbial integration of plastics in the circular economy

Project description:Plastic degradation using environmentally isolated microorganisms

| PRJEB48193 | ENA

A multicenter translational biomarker phase II trial of regorafenib in patients with non-resectable pretreated colorectal cancer.

Project description:Primary objectives: The primary objective is to investigate circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS). Primary endpoints: circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS).

| 2533916 | ecrin-mdr-crc

Bacteria

Project description:Bacteria isolated from soil Genome sequencing and assembly

| PRJNA623261 | ENA

Project description:Bacteria isolated from Citrus sinensis Genome sequencing and assembly

| PRJNA480461 | ENA

Project description:Bacteria isolated from human gut Genome sequencing and assembly

| PRJNA514209 | ENA