Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Degrading bacteria

ABSTRACT: degrading bacteria Raw sequence reads

PROVIDER: PRJNA318698 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3401618_1.fastq.gz	Fastqsanger.gz
	SRR3401618_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Transcriptomic analysis of PLA-degrading bacteria Brevibacillus brevis grown on polylactic acid

Project description:Polylactic acid (PLA) is a promising biodegradable material used in various fields, such as mulching films and disposable packaging materials. Biological approaches for completely degrading biodegradable polymers can provide environmentally friendly solutions. However, to our knowledge, no studies have performed transcriptome profiling to analyze PLA-degrading genes of PLA-degrading bacteria. Therefore, this study reports for the first time an RNA sequence approach for tracing genes involved in PLA biodegradation in the PLA-degrading bacterium Brevibacillus brevis. In the interpretation results of the differentially expressed genes, the hydrolase genes mhqD and nap and the serine protease gene besA were up-regulated by a fold change of 7.97, 4.89, and 4.09, respectively. This result suggests that hydrolases play a key role in PLA biodegradation by B. brevis. In addition, Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses showed that genes implicated in biofilm formation were upregulated. The biodegradation of PLA starts with bacteria attaching to the surface of PLA and forming a biofilm. Therefore, it could be confirmed that the above genes were up-regulated for access to PLA and biodegradation. Our results provide transcriptome-based insights into PLA biodegradation, which pitch a better understanding of microbial biodegradation of plastics.

2025-01-16 | GSE223668 | GEO

Xylene-degrading bacteria extracted from kitchen waste

Project description:Xylene-degrading bacteria extracted from kitchen waste Raw sequence reads

| PRJNA1152133 | ENA

phenol degrading bacteria

Project description:Isolation and identification of phenol degrading bacteria

| PRJEB31471 | ENA

Sterol-degrading bacteria

Project description:Genome analysis of sterol-degrading bacteria isolated from marine sponges

| PRJEB30766 | ENA

Acetamiprid-degrading consortium

Project description:Acetamiprid-degrading consortium Raw sequence reads