Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Nostoc punctiforme NIES-2108 isolate:NIES-2108

ABSTRACT: Nostoc punctiforme NIES-2108 from xenic culture. Genome and Assembly

PROVIDER: PRJNA319602 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR3467376_1.fastq.gz	Fastqsanger.gz
	SRR3467376_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Comparative transcriptomics of wild-type (Nostoc punctiforme ATCC 29133) and hmpD-deletion strains (UCD 543) of Nostoc punctiforme ATCC 29133

Project description:Change in gene expression for a wild-type (Nostoc punctiforme ATCC 29133) and hmpD-deletion strain (UCD 543) of Nostoc punctiforme ATCC 29133 over the time course of hormogonium development This study is further descirbed in Risser, D.D. and Meeks, J.C. 2013. Comparative transcriptomics with a motility deficient mutant leads to identification of a novel polysaccharide secretion system in Nostoc punctiforme. Molecular Microbiology

2013-01-01 | GSE42859 | GEO

Nostoc minutum NIES-26 isolate:NIES-26

Project description:Nostoc minutum NIES-26 from xenic culture. Genome sequencing and assembly

| PRJNA319601 | ENA

Comparative transcriptomics of wild-type (Nostoc punctiforme ATCC 29133) and hmpD-deletion strains (UCD 543) of Nostoc punctiforme ATCC 29133

2013-01-01 | E-GEOD-42859 | biostudies-arrayexpress

Nostoc punctiforme UO1 isolate:UO1

Project description:Nostoc punctiforme UO1 isolate:UO1 Genome sequencing and assembly

| PRJNA876278 | ENA

Nostoc punctiforme PCC 73102

Project description:Nostoc punctiforme PCC 73102 Genome sequencing and assembly

| PRJNA317596 | ENA

Nostoc punctiforme PCC 73102

Project description:Nostoc punctiforme + PKS1 compounds Raw sequence reads

| PRJNA718147 | ENA

Nostoc punctiforme PCC 73102

Project description:Nostoc punctiforme PCC 73102 Raw sequence reads

| PRJNA666330 | ENA

RNAseq analysis of the N. punctiforme transcriptome during hormogonium development

Project description:Change in gene expression for wild-type Nostoc punctiforme ATCC 29133 over the time course of hormogonium development

2017-01-25 | GSE94020 | GEO

Nostoc punctiforme PCC 73102

Project description:Comparative transcriptomics of wild-type (Nostoc punctiforme ATCC 29133) and hmpD-deletion strains (UCD 543) of Nostoc punctiforme ATCC 29133

| PRJNA183670 | ENA

The cyanobacterium, Nostoc punctiforme can protect against programmed cell death and induce defence genes in Arabidopsis thaliana.

Project description:Many cyanobacteria can form nitrogen-fixing symbioses with a broad range of plant species. Unlike other plant-bacteria symbioses, little is understood about the immunological responses induced by plant cyanobionts (symbiotic cyanobacteria). Here, we used Arabidopsis thaliana suspension cell cultures as a model system to demonstrate that the model plant-symbiotic cyanobacteria, Nostoc punctiforme is capable of protecting against plant programmed cell death (PCD). We also profiled the early transcriptomic changes that were induced in response to conditioned medium (CM) from N. punctiforme cell cultures. Interestingly, the PCD reduction was preceded by the induction of genes associated with defence and immunity, the most striking of which were a number of WRKY-family transcription factors. Down-regulated included genes involved in the regulation of cell growth and differentiation. This work is the first to show that a cyanobacteria can regulate plant PCD and provides a useful transcriptome resource for studying early plant cell responses to symbiotic cyanobacteria.

2020-12-10 | GSE155980 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data