Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Endemic lake Baikal amphipods Raw sequence reads

PROVIDER: PRJNA319818 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3467040_1.fastq.gz	Fastqsanger.gz
	SRR3467040_2.fastq.gz	Fastqsanger.gz
	SRR3467050_1.fastq.gz	Fastqsanger.gz
	SRR3467050_2.fastq.gz	Fastqsanger.gz
	SRR3467060_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 133

Similar Datasets

Putative carotenoid-binding proteins from the hemolymph of endemic Lake Baikal amphipod Eulimnogammarus cyaneus and E. vittatus

Project description:Color is an important trait in nature, playing a role in selection and speciation. The most important colorants in crustaceans are carotenoids, which in complexes with carotenoid-binding proteins provide an astonishing variety of colors from red to violet. Over 350 species and subspecies of amphipods (Crustacea: Amphipoda) endemic to Lake Baikal exhibit an impressive variability of colors and coloration patterns. However, the mechanisms forming this diversity are underexplored. In this work, we analyze the coloration of two species of endemic Lake Baikal amphipods, Eulimnogammarus cyaneus and E. vittatus. These species are brightly colored and, even more importantly, characterized by intraspecific color variability. We showed that the color of either species strongly correlated with the abundance of two putative carotenoid-binding proteins (the relative abundance of these proteins was higher in blue or teal-colored animals than in the orange- or yellow-colored ones.). With LC-MS/MS, we were able to identifiy these proteins, which turned out to be similar to the pheromone/odorant-binding protein family.

2020-06-04 | PXD018516 | Pride

Amphipods

Project description:Raw sequence reads from amphipods from Lake Baikal

| PRJNA826674 | ENA

Project description:Endemic lake Baikal amphipods Transcriptome Shotgun Assembly project

| PRJNA321360 | ENA

Project description:Lake Baikal Amphipods genome sequencing

| PRJNA1180113 | ENA

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

Lake Baikal Viromes

Project description:Lake Baikal Viromes Raw sequence reads

| PRJNA547700 | ENA

Project description:Transcriptome sequencing of cryptic species of Lake Baikal endemic amphipods (Crustacea: Amphipoda) of the genus Eulimnogammarus

| PRJNA871894 | ENA

Project description:16S/18S metabarcoding raw sequence reads - freshwater lake Baikal (Russia).

| PRJNA637453 | ENA

Pallasea cancellus

Project description:Study of phylogenetic relationships in Baikal amphipods

| PRJNA913665 | ENA

Quantitative profiling of differentially expressed miRNAs in siCTL- and siOASL-transfected HUVECs

Project description:Purpose: The goal of this study is to compare endothelial small RNA transcriptome to identify the target of OASL under basal or stimulated conditions by utilizing miRNA-seq. Methods: Endothelial miRNA profilies of siCTL or siOASL transfected HUVECs were generated by illumina sequencing method, in duplicate. After sequencing, the raw sequence reads are filtered based on quality. The adapter sequences are also trimmed off the raw sequence reads. rRNA removed reads are sequentially aligned to reference genome (GRCh38) and miRNA prediction is performed by miRDeep2. Results: We identified known miRNA in species (miRDeep2) in the HUVECs transfected with siCTL or siOASL. The expression profile of mature miRNA is used to analyze differentially expressed miRNA(DE miRNA). Conclusions: Our study represents the first analysis of endothelial miRNA profiles affected by OASL knockdown with biologic replicates.

2022-09-06 | GSE186354 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data