Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Homo sapiens

ABSTRACT: Transcriptome of paired non-tumor/tumor specimens from colorectal cancer patients

PROVIDER: PRJNA319910 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5337900.fastq.gz	Fastqsanger.gz
	SRR5337901.fastq.gz	Fastqsanger.gz
	SRR5337902.fastq.gz	Fastqsanger.gz
	SRR5337903.fastq.gz	Fastqsanger.gz
	SRR5337904.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Indirect expression microarray from 5 pairs of tissues from colorectal cancer patients

Project description:5 colorectal cancer (CRC) tissues and 5 paired non-tumor tissues from CRC patients were indirectly compared using a 17K cDNA microarray.

2011-12-27 | GSE19659 | GEO

DNA Methylation Biomarkers for Noninvasive Diagnosis of Colorectal Cancer

Project description:DNA methylation in colorectal cancer diagnosis. The Illumina GoldenGate Methylation Cancer Panel I was used to select a set of candidates markers informative of colorectal cancer diagnosis from 807 cancer-related genes. In the discovery phase, tumor tissue and paired adjacent normal mucosa from 92 colorectal patients were analyzed. Bisulphite converted DNA from 92 colorectal tumor samples and paired adjacent normal mucosa were hybridised to the Illumina GoldenGate Methylation Cancer Panel I. Additionally, replicates were hybridised for five tumor tissue and their corresponding normal mucosa for reproducibility purposes, totalling 194 samples. Three samples (SAMPLEs 49, 51, and 162) and 50 loci did not reach the quality criteria required regarding the signal-to-noise ratio and were therefore excluded from further analysis. One additional non-tumoral sample (SAMPLE 15) was removed because it exhibited a methylation pattern quiet different from that shown by the rest of normal specimens, which could be indicative of hybridization errors. These Samples and loci are included in the raw data matrix to allow other investigators to use them if different criteria are applied. They have been also included in the Sample tables with missing values in order to preserve the structure of the data across records/files (See 'data processing' section for more details).

2013-05-27 | E-GEOD-43369 | biostudies-arrayexpress

Homo sapiens

Project description:DNA hypermethylation in colorectal cancer: Colorectal cancer tissues vs. Adjacent non-tumor tissues

| PRJNA148895 | ENA

Homo sapiens

Project description:30 paired normal and tumor colorectal samples

| PRJNA300952 | ENA

RNA-seq of two paired normal and cancer tissues in two stage III colorectal cancer patients

Project description:The RNA from two paired normal and colorectal tumor tissue were sequenced by Illumina genome analyzer. 0.8 to 1.1 million reads were generated. Sequencing data was aligned with human RNA, human mitochondrial DNA and human genomic DNA by BWA. Base calling and Phred-like score was calculated by SAMTools. Whole transcriptome sequence of paired normal and tumor tissues obtained from two colorectal cancer patients

2011-05-28 | E-GEOD-29580 | biostudies-arrayexpress

miRNA expression profiling in prostate cancer and non-neoplastic tissues

Project description:miRNA expression profiles were evaluated in a series of 64 prostate clinical specimens, including 32 cancer and 32 non-neoplastic tissues. For 26 individuals, paired cancer and non-neplastic tissue was available. Tumor and non-neoplastic tissues were obtained, with appropriate informed consent and Institutional Review Board approval, from untreated prostate cancer patients subjected to radical prostatectomy. Freshly frozen surgical blocks were carefully dissected by the pathologist using H&E-stained sections as a template to identify areas containing at least 70% of tumor or normal cells. The total series comprises 64 clinical specimens, of which 32 from cancer areas and 32 from benign areas. For 26 patients, matched tumor and normal samples were available.

2015-12-23 | E-GEOD-76260 | biostudies-arrayexpress

RNA-Seq analysis of human colorectal cancer with liver metastasis

Project description:Nine specimens from three colorectal cancer (CRC) patients including adjacent normal tissue, primary tumor, and lever metastasis tissue, and three specimens from 3 CRC patients without liver metastasis were collected for RNA sequencing analysis.

2018-12-25 | GSE92914 | GEO

Homo sapiens expanded into the Northern European Plains by 45,000 years ago

Project description:1,322 morphologically unidentified fragmentary bone specimens were analyzed using MALDI-TOF and a subset of 341 bone specimens with LC-MS/MS in order to characterize their proteome for species identification and potential hominin specimens related to the LRJ transitional period derived from the site Ilsenhöhle Ranis, Germany (50°39.7563’N, 11°33.9139’E).

2023-10-20 | PXD043272 | Pride

Homo sapiens

Project description:DNA microarray analysis of human colorectal cancer specimens

| PRJNA350249 | ENA

Homo sapiens

Project description:RNA-seq of two paired normal and cancer tissues in two stage III colorectal cancer patients

| PRJNA141411 | ENA