Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Anaerobic culture of microbial

ABSTRACT: anaerobic culture of microbial Targeted Locus (Loci)

PROVIDER: PRJNA321652 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3509370_1.fastq.gz	Fastqsanger.gz
	SRR3509370_2.fastq.gz	Fastqsanger.gz
	SRR3509368_1.fastq.gz	Fastqsanger.gz
	SRR3509368_2.fastq.gz	Fastqsanger.gz
	SRR3510018_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

anaerobic culture in sulfide

Project description:anaerobic culture in sulfide Targeted Locus (Loci)

| PRJNA304772 | ENA

mixed culture metagenome

Project description:Anaerobic Targeted Locus (Loci)

| PRJNA246652 | ENA

anaerobic digester metagenome

Project description:Anaerobic digester Targeted Locus (Loci)

| PRJNA200751 | ENA

anaerobic digester metagenome

Project description:Anaerobic cellulolytic microbial communities 16S Targeted Locus (Loci)

| PRJNA217903 | ENA

The microbial functional gene diversity in anaerobic digesters under different organic loadings

Project description:Anaerobic digestion is a popular and effective microbial process for waste treatment. The performance of anaerobic digestion processes is contingent on the balance of the microbial food web in utilizing various substrates. Recently, co-digestion, i.e., supplementing the primary substrate with an organic-rich co-substrate has been exploited to improve waste treatment efficiency. Yet the potential effects of elevated organic loading on microbial functional gene community remains elusive. In this study, functional gene array (GeoChip 5.0) was used to assess the response of microbial community to the addition of poultry waste in anaerobic digesters treating dairy manure. Consistent with 16S rRNA gene sequences data, GeoChip data showed that microbial community compositions were significantly shifted in favor of copiotrophic populations by co-digestion, as taxa with higher rRNA gene copy number such as Bacilli were enriched. The acetoclastic methanogen Methanosarcina was also enriched, while Methanosaeta was unaltered but more abundant than Methanosarcina throughout the study period. The microbial functional diversity involved in anaerobic digestion were also increased under co-digestion.

2017-01-12 | GSE93419 | GEO

anaerobic digester metagenome

Project description:Anaerobic manure digester Targeted Locus (Loci)

| PRJNA192179 | ENA

mixed culture metagenome

Project description:thermophilic mixed culture Targeted Locus (Loci)

| PRJNA295446 | ENA

mixed culture metagenome

Project description:mixed culture metagenome Targeted Locus (Loci)

| PRJNA339919 | ENA

anaerobic digester metagenome

Project description:Solid state anaerobic digester Targeted Locus (Loci)

| PRJNA290510 | ENA

Multi-level microbial fingerprinting in anaerobic digestion reveals consistent fingerprinting profiles

Project description:The anaerobic digestion microbiomes has been puzzling us since the dawn of molecular methods for mixed microbial community analysis. Monitoring of the anaerobic digestion microbiome can either take place via a holistic evaluation of the microbial community through fingerprinting or by targeted monitoring of selected taxa. Here, we compared four different microbial community fingerprinting methods, i.e., amplicon sequencing, metaproteomics, metabolomics and phenotypics, in their ability to reflect the full-scale anaerobic digestion microbiome. The phenotypic fingerprinting reflects a, for anaerobic digestion, novel, single cell-based approach of direct microbial community fingerprinting. Three different digester types, i.e., sludge digesters, digesters treating agro-industrial waste and dry anaerobic digesters reflected different operational parameters. The α-diversity analysis yielded inconsistent results, especially for richness, across the different methods. In contrast, β-diversity analysis resulted in comparable profiles, even when translated into phyla or functions, with clear separation of the three digester types. In-depth analysis of each method's features i.e., operational taxonomic units, metaproteins, metabolites, and phenotypic traits, yielded certain similar features yet, also some clear differences between the different methods, which was related to the complexity of the anaerobic digestion process. In conclusion, phenotypic fingerprinting is a reliable, fast method for holistic monitoring of the anaerobic digestion microbiome, and the complementary identification of key features through other methods could give rise to a direct interpretation of anaerobic digestion process performance.

2021-05-26 | PXD024788 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data