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Chrysopogon zizanioides

ABSTRACT: Deciphering correlation between roots associated microbial communities and repressive potential of essential oil from two different genotypes of Chrysopogon zizazinoides (L.)

PROVIDER: PRJNA322597 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR3578651_1.fastq.gz	Fastqsanger.gz
	SRR3578651_2.fastq.gz	Fastqsanger.gz
	SRR3578652_1.fastq.gz	Fastqsanger.gz
	SRR3578652_2.fastq.gz	Fastqsanger.gz
	SRR3578624_1.fastq.gz	Fastqsanger.gz

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Chrysopogon zizanioides cultivar:Vetiver

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The complete mitogenome of Chrysopogon zizanioides (L.) Roberty (Poaceae), with its phylogenetic analysis.

Project description:Vetiver grass (Chrysopogon zizanioides), is a perennial and tussock C4 grass from the genus Chrysopogon of Poaceae, which has been widely used as a natural and inexpensive resource for multifarious environmental applications. The complete mitogenome of C. zizanioides was 551,622 bp in length, containing 40 protein-coding genes (PCGs), 19 transfer RNA genes (tRNAs), and six ribosomal RNA genes (rRNAs). All PCGs started with ATG and stopped with TNN (TAA, TAG, and TGA). The overall nucleotide composition is: 28.2% A, 28.2% T, 21.7% G, and 21.9% C, with a biased A + T content of 56.4%. Phylogenetic analysis using 14 PCGs of 22 species showed that C. zizanioides display a close relationship with Saccharum officinarum (LC107874) and Sorghum bicolor (DQ984518) in Poaceae.

| S-EPMC8667889 | biostudies-literature

Exploration of Cytotoxic Potential of Longifolene/Junipene Isolated from <i>Chrysopogon zizanioides</i>.

Project description:Since ancient times, Chrysopogon zizanioides has been utilized as a traditional medicinal plant for the treatment of numerous ailments, but neither its plant extract form nor its phytoconstituents have been fully explored. With this in mind, the present research was designed to isolate and structurally characterize one of its chemical constituents and evaluate its cytotoxic potential. Therefore, an ethanolic extract of roots was prepared and subjected to column chromatography using solvents of varying polarities. The obtained pure compound was characterized using various chromatographic and spectroscopic techniques such as high-performance liquid chromatography (HPLC), carbon and proton nuclear magnetic resonance (NMR), and liquid chromatography-mass spectroscopy (LC-MS) and identified as longifolene. This compound was evaluated for its cytotoxic potential using an MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) assay on the prostate (DU-145), oral (SCC-29B) cancer cell line and normal kidney cell line (Vero cells), taking doxorubicin as a standard drug. The obtained outcomes revealed that longifolene possesses cytotoxic potential against both prostate (IC50 = 78.64 µg/mL) as well as oral (IC50 = 88.92 µg/mL) cancer cell lines with the least toxicity in healthy Vero cells (IC50 = 246.3 µg/mL) when compared to doxorubicin. Hence, this primary exploratory study of longifolene exhibited its cytotoxic potency along with wide safety margins in healthy cell lines, giving an idea that the compounds possess some ability to differentiate between cancerous cells and healthy cells.

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Proteomic profiling of vetiver grass (<i>Chrysopogon zizanioides</i>) under 2,4,6-trinitrotoluene (TNT) stress.

Project description:Vetiver grass is an ideal plant for 2,4,6-trinitrotoluene (TNT) phytoremediation, due to its ability to tolerate and metabolize TNT as previously reported. The current study is the first attempt to investigate the changes in the proteomic profile of a plant under TNT stress. Vetiver plants were grown in nutrient media with varying concentrations of TNT (0, 25, 50, and 100 mg L-1) for 10 days. Although the plants appeared healthy, significant biomass reductions (p = 0.0008) were observed in treated plants. Total proteins in the root decreased significantly (p = 0.0003). Proteomic analysis of root proteins revealed the downregulation of functional proteins involved in key cellular mechanisms such as transcription, ribosome biogenesis, nucleo-cytoplasmic transport of proteins, protein glycosylation, and translation. Growth-related proteins were downregulated; plant defense proteins were upregulated at lower TNT concentrations but downregulated at higher concentrations. Comprehensive understanding of changes in the proteomic profile provides important clues to the mechanism of TNT stress response and tolerance in vetiver.

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