Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Corallina officinalis microbiome

ABSTRACT: The prokaryotic microbiome of the red calcified macroalgae Corallina officinalis has been sequenced using the V6 region of 16S rRNA. Raw sequence reads

PROVIDER: PRJNA324179 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3655250.fastq.gz	Fastqsanger.gz
	SRR3655250_1.fastq.gz	Fastqsanger.gz
	SRR3655250_2.fastq.gz	Fastqsanger.gz
	SRR3655260.fastq.gz	Fastqsanger.gz
	SRR3655260_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 54

Similar Datasets

Corallina pilulifera

Project description:Corallina pilulifera overview

| PRJNA192184 | ENA

Chara corallina

Project description:Chara corallina overview

| PRJNA158205 | ENA

Chara corallina

Project description:Transcriptome of Chara corallina

| PRJNA606121 | ENA

Corallina pilulifera

Project description:Corallina pilulifera Genome sequencing

| PRJNA191881 | ENA

Nonomuraea corallina

Project description:Nonomuraea corallina Genome sequencing and assembly

| PRJNA893870 | ENA

Chara corallina

Project description:High-throughput sequencing of small RNAs in Chara corallina

| PRJNA143105 | ENA

High-throughput sequencing of small RNAs in Chara corallina

Project description:Small RNAs (21-24 nt) are pivotal regulators of gene expression that guide both transcriptional and post-transcriptional silencing mechanisms in diverse eukaryotes, including most if not all plants. MicroRNAs (miRNAs) and short interfering RNAs (siRNAs) are the two major types, both of which have a demonstrated and important role in plant development, stress responses and pathogen resistance. In this work, we used a deep sequencing approach (Sequencing-By-Synthesis, or SBS) to develop sequence resources of small RNAs from Chara corallina thallus in different growing conditions. The high depth of the resulting datasets enabled us to examine in detail critical small RNA features, such as size distribution, tissue-specific regulation and sequence conservation between different organs in this species. We also developed database resources and a dedicated website (http://smallrna.udel.edu/) with computational tools for allowing other users to identify new miRNAs or siRNAs involved in specific regulatory pathways, verify the degree of conservation of these sequences in other plant species and map small RNAs on genes or larger regions of the maize genome under study. Small RNA libraries were derived from thallus of Chara corallina incubated in different growth conditions. Total RNA was isolated using the Plant RNA Purification Reagent (Invitrogen) and submitted to Illumina (Hayward, CA, http://www.illumina.com) for small RNA library construction using approaches described in (Lu et al., 2007) with minor modifications. The small RNA libraries were sequenced with the Sequencing-By-Synthesis (SBS) technology by Illumina. PERL scripts were designed to remove the adapter sequences and determine the abundance of each distinct small RNA. We thank John Boyer for providing the plant material, as well as Kan Nobuta and Gayathri Mahalingam for assistance with the computational methods.

2011-04-29 | E-GEOD-28752 | biostudies-arrayexpress

Systems-based characterization of specialized metabolites biosynthesis in Cornus officinalis

Project description:In this study, we performed LC-QTOFMS-based metabolomics and RNA-seq based transcriptome analysis using seven tissues of C. officinalis.

2020-07-07 | GSE144198 | GEO

Nonomuraea corallina strain:MCN248

Project description:Nonomuraea corallina strain:MCN248 Genome sequencing and assembly

| PRJNA905209 | ENA

Cyathula officinalis isolate:Cyathula officinalis

Project description:Cyathula officinalis isolate:Cyathula officinalis Genome sequencing

| PRJNA755870 | ENA