Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Coral

ABSTRACT: Multiple coral species including 2 Acropora spp, Montipora spp, Pocillopora acuta, Porites irregularis, Montipora aequituberculata, Porites lobata, Porites rus Raw sequence reads

PROVIDER: PRJNA325688 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3668230_1.fastq.gz	Fastqsanger.gz
	SRR3668230_2.fastq.gz	Fastqsanger.gz
	SRR3668240_1.fastq.gz	Fastqsanger.gz
	SRR3668240_2.fastq.gz	Fastqsanger.gz
	SRR3668260_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 106

Similar Datasets

Project description:Pocillopora eydouxi, Porites lobata, and Porites rus Raw sequence reads

| PRJNA506847 | ENA

Metaproteome analysis of the coral holobiont demonstrates algal symbiont quiescence under thermal stress

Project description:Raw metabolomic Mass spectrometry data from thermal stress experiment on 3 corals from the Great Barrier Reef, Acropora hyacinthus , Porites lobata and Stylophora pistillata.

2024-05-22 | MSV000094832 | MassIVE

Hexacorallia

Project description:Coral diazotroph communities - Pocillopora damicornis, Galaxea fascicularis, Porites rus, Acropora secale

| PRJNA668126 | ENA

Application of 1H-NMR Metabolomic Profiling for Reef-Building Corals

Project description:In light of global reef decline new methods to accurately, cheaply, and quickly evaluate coral metabolic states are needed to assess reef health. Metabolomic profiling can describe the response of individuals to disturbance (i.e., shifts in environmental conditions) across biological models and is a powerful approach for characterizing and comparing coral metabolism. For the first time, we assess the utility of a proton-nuclear magnetic resonance spectroscopy (1H-NMR)-based metabolomics approach in characterizing coral metabolite profiles by 1) investigating technical, intra-, and inter-sample variation, 2) evaluating the ability to recover targeted metabolite spikes, and 3) assessing the potential for this method to differentiate among coral species. Our results indicate 1H-NMR profiling of Porites compressa corals is highly reproducible and exhibits low levels of variability within and among colonies. The spiking experiments validate the sensitivity of our methods and showcase the capacity of orthogonal partial least squares discriminate analysis (OPLS-DA) to distinguish between profiles spiked with varying metabolite concentrations (0 mM, 0.1 mM, and 10 mM). Finally, 1H-NMR metabolomics coupled with OPLS-DA, revealed species-specific patterns in metabolite profiles among four reef-building corals (Pocillopora damicornis, Porites lobata, Montipora aequituberculata, and Seriatopora hystrix). Collectively, these data indicate that 1H-NMR metabolomic techniques can profile reef-building coral metabolomes and have the potential to provide an integrated picture of the coral phenotype in response to environmental change.

2014-11-20 | MTBLS116 | MetaboLights

jaPorRusx

Project description:Porites rus

| PRJEB75056 | ENA

jaPorLoba

Project description:Porites lobata

| PRJEB82742 | ENA

Porites rus

Project description:Porites rus overview

| PRJNA1109510 | ENA

Pocillopora acuta

Project description:Pocillopora acuta overview