Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Long non-coding RNAs responsive to salt and boron stress in the hyper-arid lluteño maize from Atacama desert

PROVIDER: PRJNA327501 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3737040_1.fastq.gz	Fastqsanger.gz
	SRR3737040_2.fastq.gz	Fastqsanger.gz
	SRR3737041_1.fastq.gz	Fastqsanger.gz
	SRR3737041_2.fastq.gz	Fastqsanger.gz
	SRR3737042_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Abundant and diverse non-coding small RNAs identified in an extremophilic microbial community using metatranscriptomics

Project description:Regulatory small RNAs (sRNAs) represent a major class of regulatory molecules that play large-scale and essential roles in many cellular processes across all domains of life. Microbial sRNAs have been primarily investigated in a few model organisms and little is known about the dynamics of sRNA synthesis in natural environments, and the roles of these short transcripts at the community level. Analyzing the metatranscriptome of a model extremophilic community inhabiting halite nodules (salt rocks) from the Atacama Desert, sampled over two years with different weather conditions, with SnapT – a new sRNA annotation pipeline – we discovered hundreds of intergenic (itsRNAs) and antisense (asRNAs) sRNAs expressed.

2020-01-09 | GSE137164 | GEO

soil metagenome

Project description:Soil microbial communities of a pH gradient in the hyper-arid Atacama Desert

| PRJNA358231 | ENA

halite metagenome

Project description:Drivers of Diversity for Microbial Communities Inhabiting Halites from the Hyper-arid Zone of the Atacama Desert

| PRJNA196744 | ENA

Boron homeostasis functions in meristem maintenance in maize by regulating knotted1, cell cycle, and hormone signaling pathways

Project description:Here we report, that levels of the micronutrient boron are instrumental for meristem maintenance by integration into specific meristem maintenance pathways. We used RNA-seq analysis of the boron deficient maize mutant tassel-less1 to identify early molecular defects induced by boron deficiency in maize reproductive (tassel) meristems. RNA-seq results were independently verified through downstream in silico, double mutant, microscopy, proteomic, and molecular analyses.

2022-08-31 | GSE169600 | GEO

Expression data from arabidopsis root in response to boron toxicity

2011-11-01 | GSE32659 | GEO

maize leaf ESI-Q-TOF MS - Comparative analysis of salt-responsive phosphoproteins in maize leaves using Ti(4+)--IMAC enrichment and ESI-Q-TOF MS

Project description:Comparative analysis of salt-responsive phosphoproteins in maize leaves using Ti4+-IMAC enrichment and ESI-Q-TOF MS

2012-12-14 | PXD000027 | Pride

Expression data from arabidopsis root in response to boron toxicity

Project description:Boron is an essential micronutrient for plants and is taken up in the form of boric acid (BA). Despite this, a high BA concentration is toxic for the plants, inhibiting root growth and is thus a significant problem in semi-arid areas in the world. In this work, we report the molecular basis for the inhibition of root growth caused by boron. We used microarrays to detail the global gene expression underlying boron toxicity in roots. 5-day-old arabidopsis plants were transferred to medium with high boron concentration (½ MS medium supplemented with 5mM BA) and control conditions (½ MS medium). We determined that 5 mM BA is the minimum concentration that produces the maximum effect, stunting root growth by ~50% after 5 days as compared with control conditions. We analyzed the transcript profiles in roots by microarray analysis (Affymetrix ATH1 Genome Array). We compared the transcripts obtained at 12 hrs of BA treatment.

2011-11-01 | E-GEOD-32659 | biostudies-arrayexpress

Convergent and divergent responses of the rhizosphere chemistry and bacterial communities to a stress gradient in the Atacama Desert.

Project description:Untargeted analysis of plant and rhizosphere samples from the Atacama Desert.

2023-10-13 | MSV000093102 | MassIVE

Atacama desert

Project description:Atacama desert Metagenome

| PRJNA429148 | ENA

Soil bacterial genomes and metagenome-assembled genomes of an altitudinal transect in the hyper-arid Atacama Desert

Project description:Soil bacterial genomes and metagenome-assembled genomes of an altitudinal transect in the hyper-arid Atacama Desert Genome sequencing and assembly

| PRJNA705650 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data