Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Schmidtea mediterranea strain:Sexual

ABSTRACT: Role of microRNA miR124c during planarian brain regeneration.

PROVIDER: PRJNA329429 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3928180_1.fastq.gz	Fastqsanger.gz
	SRR3928180_2.fastq.gz	Fastqsanger.gz
	SRR3928182_1.fastq.gz	Fastqsanger.gz
	SRR3928182_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Schmidtea mediterranea strain:Sexual

Project description:Role of cytoplasmic poly (A) binding protein during planaria regeneration

| PRJNA329450 | ENA

Schmidtea mediterranea

Project description:neuroendocrine control of planarian regeneration

| PRJNA866846 | ENA

The head-regeneration transcriptome of the planarian Schmidtea mediterranea

Project description:The head-regeneration transcriptome of the planarian Schmidtea mediterranea

2011-07-15 | E-MTAB-607 | biostudies-arrayexpress

Schmidtea mediterranea

Project description:Poly (A) Binding Protein 2 plays a crucial role in stem cell differentiation during regeneration in the planarian Schmidtea mediterranea.

| PRJNA1031933 | ENA

Schmidtea mediterranea

Project description:[E-MTAB-607] Transcription profiling by high throughput sequencing of the planarian Schmidtea mediterranea during head regeneration

| PRJNA146171 | ENA

Identification of EV-responsive transcripts in the planarian Schmidtea mediterranea

Project description:The roles of extracellular vesicles in animal models of regeneration are poorly characterized. The goal of this study was to identify differentially expressed transcripts in planarian flatworms after injection of buffer only or extracellular vesicles compared to uninjected animals.

2024-10-01 | GSE261722 | GEO

Transcriptome analysis reveals strain-specific and conserved stemness genes in Schmidtea mediterranea

Project description:The transcriptome of the planarian Schmidtea mediterranea is not well characterized. We have used RNA-Seq to characterize the transcriptome in both sexual and asexual strains of S. mediterranea from both untreated and irradiated animals. Moreover, we have performed RNA-Seq on RNA purified from FACS sorted neoblasts and differentiated cells. Together these studies expand our understanding of the planarian transcriptome and have identified strain-specific, neoblast-specific, and conserved transcripts. RNA-Seq was performed on RNA isolated from untreated and irradiated S. mediterranea animals from both the sexual and asexual strains, on FACS purified X1 neoblasts, X2 neoblasts, and Xins differentiated cells. One of the raw data files for GSM847465 is missing. The fasta file is provided at http://genome.vcell.uchc.edu/GenomeData02/Graveley_Lab_Public_Data/Planarian/S.mediterranea_SexNIRmRNA3.fa.gz

2012-04-24 | E-GEOD-34326 | biostudies-arrayexpress

Transcriptome analysis reveals strain-specific and conserved stemness genes in Schmidtea mediterranea

2012-04-25 | GSE34326 | GEO

Digital Gene Expression profiling of Schmidtea mediterranea stem cells.

Project description:The freshwater planarian Schmidtea mediterranea is well known by its amazing regeneration capabilities thanks to the presence of adult stem cells, the neoblasts, the only proliferative cells and responsible for the differentiation in all the cell types of the organism. This study involves the creation of separated transcript libraries from both, isolated neoblasts and differentiated cells, as well as their posterior sequencing and quantification through Digital Gene Expression (DGE) for the characterization of the neoblast transcriptome. Three DGE libraries were produced from FACS isolated cell populations X1 (proliferating stem cells, S/G2/M), X2 (a mix of proliferating stem cells and stem cell progeny, G0/G1) and Xin (differentiated cells, G0/G1). Cells were isolated from a pool of 32 regenerating animals two days after being cut off pre- and post-pharingeally to trigger regeneration and neoblast proliferation.

2015-05-07 | E-GEOD-51681 | biostudies-arrayexpress

Schmidtea mediterranea

Project description:Planarian stem cell transcriptome

| PRJNA167022 | ENA