Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Micromonospora phaseoli strain:CGMCC 4.7038 | isolate:CGMCC 4.7038

ABSTRACT: Xiangella phaseoli CGMCC 4.7038 genome sequencing

PROVIDER: PRJNA334921 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR4233865_1.fastq.gz	Fastqsanger.gz
	SRR4233865_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Micromonospora phaseoli

Project description:Xiangella phaseoli overview

| PRJNA403905 | ENA

Micromonospora phaseoli strain:DSM 45730 | isolate:DSM 45730

Project description:Xiangella phaseoli DSM 45730 genome sequencing

| PRJNA402486 | ENA

Micromonospora phaseoli strain:NBRC 110907

Project description:Xiangella phaseoli NBRC 110907 genome sequencing project

| PRJDB10179 | ENA

Project description:Xiangella phaseoli CGMCC 4.7038

| PRJEB16803 | ENA

Global-gene expression of Phytophthora phaseoli

Project description:Lima bean is an important vegetable processing crop to the Mid-Atlantic U.S. and is highly susceptible to the oomycete pathogen Phytophthora phaseoli, which causes downy mildew. P. phaseoli resides in the same clade with the late blight pathogen, Phytophthora infestans. Genetic resistance and fungicides are used to manage P. phaseoli and often fail. Currently there are no molecular data on this pathosystem. To rectify this situation and determine virulence mechanisms in P. phaseoli we performed a whole-transcriptome analysis using Illumina mRNA-Seq. Six libraries were generated and compared, plate-grown and plant-grown. Our data were normalized and were matched to the P. infestans gene models to obtain the abundance of the sequence reads. This resulted in 10,427 P. phaseoli genes with homology to P. infestans and with expression in either one of the libraries. Upon closer examination, 318 P. phaseoli-homologs matched either known or putative virulence genes in P. infestans. We present data from the whole transcriptome as well as specifically chosen genes from this set of 318. Interestingly, in six libraries from P. phaseoli we found a commonly expressed gene set of 66 out of 563 predicted RXLR genes in P. infestans. The majority of the differentially expressed RxLR and elicitin-like were up-regulated in planta, while the reverse was true for crinkler homologs. These results are discussed with respect to possible pathogenicity mechanisms in P. phaseoli and how they compare to P. infestans.

2011-08-01 | GSE23453 | GEO

Global-gene expression of Phytophthora phaseoli

2011-08-01 | E-GEOD-23453 | biostudies-arrayexpress

Micromonospora sediminimaris strain:CGMCC 4.3550 | isolate:CGMCC 4.3550

Project description:Verrucosispora sediminis CGMCC 4.3550 genome sequencing

| PRJNA323302 | ENA

Micromonospora qiuiae strain:CGMCC 4.5826 | isolate:CGMCC 4.5826

Project description:Verrucosispora qiuiae CGMCC 4.5826 genome sequencing

| PRJNA332173 | ENA

Xanthomonas phaseoli pv. phaseoli strain:CFBP412

Project description:Xanthomonas phaseoli pv. phaseoli strain:CFBP412 Genome sequencing and assembly

| PRJNA384143 | ENA