Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rhodococcus maanshanensis strain:DSM 44675 | isolate:DSM 44675

ABSTRACT: Rhodococcus maanshanensis DSM 44675 genome sequencing

PROVIDER: PRJNA335134 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR4236209_1.fastq.gz	Fastqsanger.gz
	SRR4236209_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Rhodococcus opacus strain:DSM 44240 | isolate:DSM 44240

Project description:Rhodococcus percolatus DSM 44240 genome sequencing

| PRJNA334662 | ENA

Rhodococcus triatomae strain:DSM 44892 | isolate:DSM 44892

Project description:Rhodococcus triatomae DSM 44892 genome sequencing

| PRJNA331770 | ENA

Multi-omics investigation of Rhodococcus sp. strain DN22

Project description:Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) is a persistent nitramine explosive with long-lasting properties. Rhodococcus sp. strain DN22 has been discovered as one of the microorganisms capable of RDX degradation. Despite respectable studies on Rhodococcus sp. strain DN22, the proteins participating in RDX degradation (Oxidoreductase and Cytochrome P450) in the strain remain to be fragments. In this study, complete genome of Rhodococcus sp. strain DN22 was sequenced and analyzed, and the entire sequences of the two genes encoding Oxidoreductase and Cytochrome P450 in Rhodococcus sp. strain DN22 were predicted, which were validated through proteomic data. Besides, despite the identification of certain chemical substances as proposed characterized degradation intermediates of RDX, few studies have investigated the physiological changes and metabolic pathways occurring within Rhodococcus sp. cells when treated with RDX, particularly through the use of mass spectrometry-based omics. Hence, proteomics and metabolomics of Rhodococcus sp. strain DN22 were performed and analyzed with the presence or absence of RDX in the medium. A total of 3186 protein groups were identified and quantified between the two groups, with 117 proteins being significantly differentially expressed proteins. A total of 1056 metabolites were identified after merging positive and negative ion modes, among which 131 metabolites were significantly differential. Through the combined analysis of differential proteomics and metabolomics, several KEGG pathways, including two-component system, ABC transporters, alanine, aspartate and glutamate metabolism, arginine biosynthesis, purine metabolism, nitrogen metabolism, and phosphotransferase system (PTS) were found to be significantly enriched. We expect that our investigation will expand the acquaintance of Rhodococcus sp. strain DN22, and the knowledge of microbial degradation.

2024-05-22 | PXD044565 | Pride

Rhodococcus koreensis strain:dsm 44498

Project description:Rhodococcus koreensis DSM 44498 genome sequencing

| PRJNA303863 | ENA

Rhodococcus jostii strain:dsm 44719

Project description:Rhodococcus jostii DSM 44719 genome sequencing

| PRJNA303864 | ENA

Rhodococcus pyridinivorans strain:dsm 44555

Project description:Rhodococcus pyridinivorans DSM 44555 genome sequencing

| PRJNA303862 | ENA

Rhodococcus opacus strain:DSM 44186

Project description:Rhodococcus opacus strain:DSM 44186 Genome sequencing