Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Endophyte metagenome

ABSTRACT: Seed endophytic bacteria of Crotalaria pumila growing on metal mine residues

PROVIDER: PRJNA336347 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3997480.fastq.gz	Fastqsanger.gz
	SRR3997490.fastq.gz	Fastqsanger.gz
	SRR3997481.fastq.gz	Fastqsanger.gz
	SRR3997491.fastq.gz	Fastqsanger.gz
	SRR3997482.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

endophyte metagenome

Project description:Endophytic bacteria of tobacco

| PRJNA1056315 | ENA

endophyte metagenome

Project description:Metagenomic analysis of Azolla sp. endophytic bacteria Metagenome

| PRJNA589741 | ENA

Toxic metal tolerance of Arabidopsis arenosa inoculated with fungal endophyte Mucor sp. Gene expression study

Project description:To determine the mechanisms of improved toxic metal tolerance of A. arenosa inoculated with Mucor sp. whole gemone microarray profiling was employed. Metal toxicity altered the expression of 5169 probe sets; 2861 genes were up-regulated and 2308 down-regulated. Inoculation with the fungi induced changes in the expression of 899 probes from the above presented data set; 492 genes were up-regulated and 314 were down-regulated. The expression of 93 genes (63 and 30, up and down-regulated respectively) was affected by both treatments (Fig. 5A-B). Genes differentially expressed in E+ plants vs E- from mine dump substrate were subject to GO analysis (gene ontology) to identify enriched terms with a cut-off rate of 0.01. The majority of the genes upregulated belonged to ROS metabolism, response to biotic and abiotic stimuli, response to ion starvation and ET biosynthesis and signaling functional categories. Among down-regulated transcripts GO analysis revealed a significant enrichment in the regulation of anthocyanin biosynthesis term.

2018-07-01 | GSE100525 | GEO

endophyte metagenome

Project description:the total DNA of endophytic bacteria in wheat inoculated sequencing

| PRJNA395432 | ENA

Pituitary Gene Expression Profiles of Growing Beef Steers Grazing High versus Low Endophyte-Infected Tall Fescue Grass

Project description:Neotyphodium coenophialum is an endophytic fungus that infects most tall fescue (Festuca arundinacea) pastures that are commonly used in animal grazing systems in the United States. Beef cattle grazing such pastures are impaired in health and production performance, resulting in a large economic loss in US food-animal production systems. Based on clinical and biochemical blood analyte profiles, hepatic targeted gene and protein analyses, and hepatic transcriptomic profiling, microarray analysis using the BovGene-1_0-v1 array (Affymetrix) was conducted to determine if grazing endophyte-infected tall fescue pastures affects pituitary gene expression profiles of growing beef steers. The specific overall hypothesis tested was that grazing high endophyte-infected pasture would alter the pituitary genomic expression profiles of the same growing steers, especially genes involved in production and secretion of prolactin, growth hormone, thyroid stimulating hormone, and adrenocorticotropic hormone.

2014-10-23 | GSE62570 | GEO

Project description:Endophytic bacteria from seed of HuangJing

| PRJNA868149 | ENA

plant metagenome strain:Grapevine Red Globe and Bangalore Blue

Project description:Seed/embryo transmission of endophytic bacteria

| PRJNA701136 | ENA

RNA-seq Transcriptional Profiling of Herbaspirillum seropedicae Colonizing Bread Wheat (Triticum aestivum) Roots.

Project description:H. seropedicae is a diazotrophic and endophytic bacterium that associates with economically important grasses promoting plant growth and increasing productivity. To identify genes related to bacterial ability to colonize and promote plant growth wheat seedlings growing hydroponically in Hoaglandâs medium were inoculated with H. seropedicae the bacteria and incubated for 3 days. mRNA from the bacteria present in the root surface and in the plant medium were purified, depleted from rRNA and used for RNA-seq profiling. RT-qPCR analyses were conducted to confirm regulation of selected genes. Comparison of RNA profile of bacteria attached to the root and planktonic revealed an extensive metabolic adaptation to the epiphytic life style.

2016-07-03 | E-MTAB-3646 | biostudies-arrayexpress

Hepatic Gene Expression Profiles of Growing Beef Steers Grazing High vs. Low Endophyte-Infected Tall Fescue Grass

Project description:Neotyphodium coenophialum is an endophytic fungus that infects most tall fescue (Festuca arundinacea) pastures that are commonly used in animal grazing systems in the United States. Beef cattle grazing such pastures are impaired in health and production performance, resulting in a large economic loss in US food-animal production systems. Based on the clinical symptoms and laboratory analyses of blood, it was hypothesized that such affected cattle display liver-specific changes in the expression of gene transcripts that are associated with the metabolic enzymes and transporters critical for beef health and performance. Microarray analysis using the GeneChip Bovine Genome Array (Affymetrix, Inc., Santa Clara, CA) was conducted to determine if grazing endophyte-infected tall fescue pastures affects the liver gene expression profiles of growing beef steers.

2010-11-30 | GSE23894 | GEO

endophyte metagenome

Project description:MG36/37: Grape FS shoot-tip Endophytic Microbiome-Whole metagenome-Bacteria Raw sequence reads

| PRJNA351787 | ENA