Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pseudomonas extremorientalis strain:LMG 19695

ABSTRACT: Pseudomonas extremorientalis strain:LMG 19695 Genome sequencing and assembly

PROVIDER: PRJNA338696 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	MDGK01.dat.gz	Other
	MDGK01.fasta.gz	Fasta.gz
	MDGK01.master.dat	Other
	MDGK01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Pseudomonas extremorientalis strain:LMG 19695

Project description:Pseudomonas extremorientalis LMG 19695 Genome sequencing

| PRJNA303781 | ENA

Pseudomonas extremorientalis

Project description:Pseudomonas extremorientalis overview

| PRJNA338709 | ENA

Pseudomonas extremorientalis strain:1502IPR-01

Project description:Pseudomonas extremorientalis strain:1502IPR-01 Genome sequencing

| PRJNA788188 | ENA

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Draft genome sequence of Pseudomonas extremorientalis DSM 15824T

Project description:Draft genome sequence of Pseudomonas extremorientalis DSM 15824T

| PRJEB29960 | ENA

Pseudomonas trivialis strain:LMG 21464

Project description:Pseudomonas trivialis strain:LMG 21464 Genome sequencing and assembly

| PRJNA338684 | ENA

Pseudomonas azotoformans strain:LMG 21611

Project description:Pseudomonas azotoformans strain:LMG 21611 Genome sequencing and assembly

| PRJNA338491 | ENA

Pseudomonas costantinii strain:LMG 22119

Project description:Pseudomonas costantinii strain:LMG 22119 Genome sequencing and assembly

| PRJNA338492 | ENA

Pseudomonas aeruginosa strain:LMG 1272

Project description:Pseudomonas aeruginosa strain:LMG 1272 Genome sequencing and assembly

| PRJNA552675 | ENA

Pseudomonas thivervalensis strain:LMG 21626

Project description:Pseudomonas thivervalensis strain:LMG 21626 Genome sequencing and assembly

| PRJNA298287 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data