Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Uncultured cyanobacterium

ABSTRACT: uncultured cyanobacterium Metagenome

PROVIDER: PRJNA338894 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5431780.fastq.gz	Fastqsanger.gz
	SRR5431781.fastq.gz	Fastqsanger.gz
	SRR5431782.fastq.gz	Fastqsanger.gz
	SRR5431783.fastq.gz	Fastqsanger.gz
	SRR5431784.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 11

Similar Datasets

uncultured cyanobacterium

Project description:uncultured cyanobacterium overview

| PRJNA38701 | ENA

uncultured marine cyanobacterium

Project description:uncultured marine cyanobacterium overview

| PRJNA342884 | ENA

Cyanobacterium

Project description:Cyanobacterium Genome sequencing and assembly

| PRJNA322208 | ENA

Cyanobacterium aponinum

Project description:Cyanobacterium aponinum overview

| PRJNA415504 | ENA

cyanobacterium str. Texas

Project description:cyanobacterium str. Texas overview

| PRJNA166999 | ENA

cyanobacterium str. Missouri

Project description:cyanobacterium str. Missouri overview

| PRJNA166998 | ENA

cyanobacterium TDX16

Project description:cyanobacterium TDX16 Genome sequencing and assembly

| PRJNA382458 | ENA

Expression analysis of uncultured and culture-derived colony forming unit-monocytes and megakaryocytes

Project description:The cellular composition of heterogeneous samples can be predicted from reference gene expression profiles that represent the homogeneous, constituent populations of the heterogeneous samples. However, existing methods fail when the reference profiles are not representative of the constituent populations. We developed PERT, a new probabilistic expression deconvolution method, to address this limitation. PERT was used to deconvolve cellular composition of variably sourced and treated heterogeneous human blood samples. Our results indicate that even after correcting batch effects, cells presenting the same cell surface antigens display different transcriptional programs when they are uncultured versus culture-derived. Given gene expression profiles of culture-derived heterogeneous samples and profiles of uncultured reference populations, PERT was able to accurately recover proportions of pure populations composing the heterogeneous samples. We anticipate that PERT will be widely applicable to expression deconvolution problems using profiles from reference populations that vary from the corresponding constituent populations in cellular state but not cellular identity. Gene expression microarray to examine transcriptome variations between uncultured and culture-deried blood cells of the same phenotype as defined by the on and off expression of antigens.

2012-09-13 | GSE40830 | GEO

Gloeomargaritales cyanobacterium VI4D9

Project description:Gloeomargaritales cyanobacterium VI4D9 Genome sequencing

| PRJNA782984 | ENA

Oscillatoriaceae cyanobacterium JGI_SA12_E03_023

Project description:Oscillatoriaceae cyanobacterium JGI_SA12_E03_023 Genome sequencing

| PRJNA585543 | ENA