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Bienertia sinuspersici

ABSTRACT: Bienertia sinuspersici: Young to Mature Leaf Development

PROVIDER: PRJNA340188 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR4069410_1.fastq.gz	Fastqsanger.gz
	SRR4069410_2.fastq.gz	Fastqsanger.gz
	SRR4069411_1.fastq.gz	Fastqsanger.gz
	SRR4069411_2.fastq.gz	Fastqsanger.gz
	SRR4069418_1.fastq.gz	Fastqsanger.gz

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Project description:In order to understand the mechanism of single-cell C4 photosynthesis, we extracted total RNA from leaf tissues at young, intermediate, and mature stages. We then conducted gene expression profiling using RNA-seq and de novo transcriptome assembly. The gene expression data was normalized using Transcript Per Million, which was additionally adjusted by the Trimmed Mean of the M values (TPMTMM).

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Subcellular organization of single-cell C4 photosynthesis in Bienertia sinuspersici determined by large scale proteomics

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The complete chloroplast genome sequence of <i>Bienertia sinuspersici</i>.

Project description:The Bienertia sinuspersici chloroplast whole genome (cpDNA) sequencing was completed in this study. Bienertia sinuspersici chloroplast genome is 153,472?bp in length and contains 127 genes, such as 83 unique protein-coding genes, 36 tRNA genes and eight rRNA genes. There were two inverted repeat regions (IR) and small and large single-copy regions (SSC and LSC) with 24,948?bp, 19,016 and 84,560?bp, respectively. 59% of the B. sinuspersici cpDNA consisted of gene-coding regions (protein-coding and RNA genes). The overall GC contents of the B. sinuspersici cpDNA were 36.59% and in the LSC, SSC and IR regions were 34.47%, 29.42% and 42.94%, respectively. A phylogenetic analysis of seven complete cpDNA from Chenopodiaceae family shows that B. sinuspersici cpDNA is closely related to Salicornia species.

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