Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sediment metagenome

ABSTRACT: asphalt oil contaminated sediment Raw sequence reads

PROVIDER: PRJNA340349 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR4089360_1.fastq.gz	Fastqsanger.gz
	SRR4089360_2.fastq.gz	Fastqsanger.gz
	SRR4089361_1.fastq.gz	Fastqsanger.gz
	SRR4089361_2.fastq.gz	Fastqsanger.gz
	SRR4089362_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

High-throughput 16S rRNA amplicon pyrosequencing of contaminated aquifer sediment

Project description:Contaminated aquifer (Dusseldorf-Flinger, Germany) templates extracted from 5 sediment depths ranging between 6.4 and 8.4 m below ground and over 3 years of sampling were amplified for amplicon pyrosequencing using the primers Ba27f (5’-aga gtt tga tcm tgg ctc ag-3’) and Ba519r (5’- tat tac cgc ggc kgc tg-3’), extended as amplicon fusion primers with respective primer A or B adapters, key sequence and multiplex identifiers (MID) as recommended by 454/Roche. Amplicons were purified and pooled as specified by the manufacturer. Emulsion PCR (emPCR), purification of DNA-enriched beads and sequencing run were performed following protocols and using a 2nd generation pyrosequencer (454 GS FLX Titanium, Roche) as recommended by the developer. Quality filtering of the pyrosequencing reads was performed using the automatic amplicon pipeline of the GS Run Processor (Roche), with a slight modification concerning the valley filter (vfScanAllFlows false instead of TiOnly) to extract the sequences. Demultiplexed raw reads were furhter trimmed for quality and lenght (>250 bp).

2012-11-11 | GSE25345 | GEO

Oil-contaminated sediment

Project description:Oil-contaminated sediment Raw sequence reads

| PRJNA587011 | ENA

oil-contaminated sediment 16S

Project description:oil-contaminated sediment 16S Raw sequence reads

| PRJNA778045 | ENA

High-throughput 16S rRNA amplicon pyrosequencing of contaminated aquifer sediment

2012-11-11 | E-GEOD-25345 | biostudies-arrayexpress

oil-contaminated sediment

Project description:oil-contaminated sediment Transcriptome

| PRJNA587015 | ENA

sediment metagenome

Project description:Antimony contaminated sediments Raw sequence reads

| PRJNA279283 | ENA

Study of microbial functional structure in Xiangjiang River sediment

Project description:Xiangjiang River (Hunan, China) has been contaminated with heavy metal for several decades by surrounding factories. However, little is known about the influence of a gradient of heavy metal contamination on the diversity, structure of microbial functional gene in sediment. To deeply understand the impact of heavy metal contamination on microbial community, a comprehensive functional gene array (GeoChip 5.0) has been used to study the functional genes structure, composition, diversity and metabolic potential of microbial community from three heavy metal polluted sites of Xiangjiang River.

2016-08-02 | GSE85064 | GEO

freshwater sediment metagenome

Project description:Sediment Raw sequence reads

| PRJNA309913 | ENA

sediment metagenome

Project description:sediment metagenome Raw sequence reads

| PRJNA876073 | ENA

sediment metagenome

Project description:Sediment Metagenome Raw sequence reads

| PRJNA387284 | ENA