Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Hibiscus syriacus isolate:Gangneung | cultivar:Hibiscus syriacus Gangneung

ABSTRACT: Hibiscus syriacus isolate:Gangneung | cultivar:Hibiscus syriacus Gangneung Genome sequencing and assembly

PROVIDER: PRJNA341314 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR4181660_1.fastq.gz	Fastqsanger.gz
	SRR4181660_2.fastq.gz	Fastqsanger.gz
	SRR4181661_1.fastq.gz	Fastqsanger.gz
	SRR4181661_2.fastq.gz	Fastqsanger.gz
	SRR4181662_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 26

Similar Datasets

Hibiscus syriacus cultivar:Gangneung

Project description:Hibiscus syriacus cultivar:Gangneung Genome sequencing and assembly

| PRJNA320964 | ENA

Small RNA transcriptome of Hibiscus syriacus provides insights into the potential influence of microRNAs in flower development and terpene synthesis

Project description:MicroRNAs (miRNAs) are essential small RNA molecules that regulate the expression of target mRNAs in plants and animals. Here, we aimed to identify miRNAs and their putative targets in Hibiscus syriacus, the national flower of South Korea. Therefore, we employed high-throughput sequencing of small RNAs obtained from four different tissues (i.e., leaf, root, flower, and ovary) and identified 33 conserved and 30 novel miRNA families, many of which showed differential tissue-specific expressions. In addition, we computationally predicted novel targets of miRNAs and validated some of them using 5′ rapid amplification of cDNA ends analysis. One of the validated novel targets of miR477 was a terpene synthase, the primary gene involved in the formation of disease-resistant terpene metabolites such as sterols and phytoalexins. In addition, a predicted target of conserved miRNAs, miR396, is SHORT VEGETATIVE PHASE, which is involved in flower initiation and is duplicated in Hibiscus syriacus. Collectively, this study provides the first reliable draft of the Hibiscus syriacus miRNA transcriptome that should constitute a basis for understanding the biological roles of miRNAs in Hibiscus syriacus.

2017-09-08 | GSE99329 | GEO

Hibiscus syriacus

Project description:Hibiscus syriacus Genome sequencing

| PRJNA245844 | ENA

Hibiscus syriacus

Project description:Hibiscus syriacus overview

| PRJNA281962 | ENA

Hibiscus syriacus isolate:Gangneung

Project description:Hibiscus syriacus isolate:Gangneung Raw sequence reads

| PRJNA851544 | ENA

Hibiscus syriacus

Project description:Hibiscus syriacus Transcriptome or Gene expression

| PRJNA851843 | ENA

Hibiscus syriacus cultivar:Purple jade

Project description:Hibiscus syriacus cultivar:Purple jade Transcriptome or Gene expression

| PRJNA835664 | ENA

Hibiscus syriacus cultivar:Purple jade

Project description:Hibiscus syriacus cultivar:Purple jade Transcriptome or Gene expression

| PRJNA835665 | ENA

Hibiscus syriacus isolate:YM2019G1 | cultivar:Beakdansim

Project description:Draft genome information of white flower Hibiscus syriacus

| PRJNA535386 | ENA

Hibiscus syriacus

Project description:Small RNA transcriptome of Hibiscus syriacus provides insights into the potential influence of microRNAs in flower development and terpene synthesis

| PRJNA388107 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data