Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transgenerational effect of Chlordecone

ABSTRACT: Transgenerational effect of Chlordecone

PROVIDER: PRJNA341868 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR4167830_1.fastq.gz	Fastqsanger.gz
	SRR4167830_2.fastq.gz	Fastqsanger.gz
	SRR4167822_1.fastq.gz	Fastqsanger.gz
	SRR4167822_2.fastq.gz	Fastqsanger.gz
	SRR4167823_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 32

Similar Datasets

Transgenerational effect of Chlordecone [RNA-seq]

Project description:RNA seq project designed to understand the role of pesticide on transription of mRNA in the testis. We treated adult female mice with chlordecone with doses 0 (control), 100 Xg/kg/day and 1 mg/kg/day during gestation period E6- E15. Male born from Chlordecone- treated mice were crossed for a three generations. The testes from F3 generations were taken for mRNA extraction. For mRNA extraction we used columb. Three biological replicates used for each condition . We hypothesize that chlordecone cause changes in mRNA due to transgenerational effect of pesticides (Skinner et al, Science 2005). The changes in expression of certain genes can help us understand the effect of pesticides on many tissues. Number of sample :9 samples. We require Paired End sequencing and number of reads equal or more than 25M tags, strand specific sequencing

2018-07-10 | GSE86438 | GEO

Transgenerational effect of Chlordecone [ChIP-seq]

Project description:The environmental factors such as pesticides could affect the developmental processes and cause the phenotypic changes. Moreover, the changes could be transferred to a subsequent generation via gametes. In this project we studied whether the pesticide chlordecone could cause the developmental effects and cause the transgenerational inheritance in outbred mouse strain. Mice were treated during development at dose 100 µg/kg/day and the progeny of exposed mice were crossed for three generations. The testes of the third generations males were used for anti-H3K4me3 ChiP-seq analysis. We used two biological replicates for each condition.

2018-07-10 | GSE86439 | GEO

The transgenerational effects of pesticide chlordecone on prostate

Project description:The environmental factors such as pesticides could affect the developmental processes and cause the phenotypic changes. Moreover, the changes could be transferred to a subsequent generation via gametes. In this project we studied whether the pesticide chlordecone could cause the developmental effects and cause the transgenerational inheritance in outbred mouse strain (Swiss). Mice were treated during development (E6.5-E15.5) at dose 100 µg/kg/day and the progeny of exposed mice (F1) were crossed for three generations. The prostate of the first (F1) and third generation males (F3) were used for RNA-seq-analysis. We used three biological replicates for each condition.

2021-04-01 | GSE135200 | GEO

The transgenerational effects of pesticide chlordecone on prostate

Project description:The transgenerational effects of pesticide chlordecone on prostate

| PRJNA557708 | ENA

Prostate H3K4me3 ChIP-seq and the transgenerational effects of pesticide chlordecone on prostate

Project description:Prostate H3K4me3 ChIP-seq and the transgenerational effects of pesticide chlordecone on prostate

| PRJNA557706 | ENA

Histone mark modifications in murine ovary after gestational exposure to chlordecone

Project description:We hypothesized that gestational exposure to chlordecone can lead to alteration of murine ovary's epigenetic landscape. To test our hypothesis, we exposed mice to chlordecone during embryonic development and we analyzed F1 female progeny epigenetic mark H3K4me3 in ovaries. We performed ChIP using anti-H3K4me3 commercial antibody (Merck Millipore, 07-473). DNA-protein complexes were immunoprecipitated, eluted and then DNA were purified.

2019-05-21 | GSE129897 | GEO

Transgenerational effect of Chlordecone

Project description:This SuperSeries is composed of the SubSeries listed below.

2018-07-10 | GSE86440 | GEO

Mus musculus

Project description:Transgenerational effect of Chlordecone [RNA-seq]

| PRJNA341898 | ENA

Mus musculus

Project description:Transgenerational effect of Chlordecone [ChIP-seq]

| PRJNA341897 | ENA

Prostate H3K4me3 ChIP-seq

Project description:Exposure to pesticide chlordecone is associated with high risk of prostate cancer.We hypothesised that changes in histone H3K4me3 could be involved in pathological processes in prostate induced by chlordecone. We exposed mice to chlordecone during embryonic development (E6.5-E15.5) and we analysed F1 progeny male epigenetic H3K4me3 marks in prostate tissue, as well as H3K4me3 in the prostate of F3 progeny to reveal the transgenerational effects resulting from the ancestral exposure to CD. We performed ChIP using H3K4me3 commercial antibody (Merck Millipore, 07-473) and pooled prostate tissues from 4 mice. DNA-protein complex was immunoprecipitated, eluted and DNA purified.

2021-04-01 | GSE135199 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data