Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mine tailings metagenome

ABSTRACT: Microbial community succession driven by changed nutrients Raw sequence reads

PROVIDER: PRJNA342734 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR4254470.fastq.gz	Fastqsanger.gz
	SRR4254480.fastq.gz	Fastqsanger.gz
	SRR4254490.fastq.gz	Fastqsanger.gz
	SRR4254471.fastq.gz	Fastqsanger.gz
	SRR4254481.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 33

Similar Datasets

Predicting species-resolved macronutrient acquisition during succession in a model phototrophic biofilm using an integrated 'omics approach

Project description:The principles governing acquisition and interspecies exchange of nutrients in microbial communities and how those exchanges impact community productivity are poorly understood. Here, we examine energy and macronutrient acquisition in unicyanobacterial consortia for which species-resolved genome information exists for all members, allowing us to use multi-omic approaches to predict species’ abilities to acquire resources and examine expression of resource-acquisition genes during succession. Metabolic reconstruction indicated that a majority of heterotrophic community members lacked the genes required to directly acquire the inorganic nutrients provided in culture medium, suggesting high metabolic interdependency. The sole primary producer in consortium UCC-O, cyanobacterium Phormidium sp. OSCR, displayed declining expression of energy harvest, carbon fixation, and nitrate and sulfate reduction proteins but sharply increasing phosphate transporter expression over 28 days. Most heterotrophic members likewise exhibited signs of phosphorus starvation during succession. Though similar in their responses to phosphorus limitation, heterotrophs displayed species-specific expression of nitrogen acquisition genes. These results suggest niche partitioning around nitrogen sources may structure the community when organisms directly compete for limited phosphate. Such niche complementarity around nitrogen sources may increase community diversity and productivity in phosphate-limited phototrophic communities.

2017-05-24 | GSE99220 | GEO

mine tailings metagenome

Project description:gold_mine_tailings_water Raw sequence reads

| PRJNA356779 | ENA

mine tailings metagenome

Project description:mine tailings metagenome Raw sequence reads

| PRJNA783524 | ENA

mine tailings metagenome

Project description:Acid mine drainage Raw sequence reads

| PRJNA361456 | ENA

mine tailings metagenome

Project description:mine tailings metagenome Raw sequence reads

| PRJNA488335 | ENA

mine tailings metagenome

Project description:mine tailings metagenome Raw sequence reads

| PRJNA515819 | ENA

mine tailings metagenome

Project description:Bacillus sp.(in: Bacteria)Raw sequence reads

| PRJNA715379 | ENA

mine tailings metagenome

Project description:acid mine drainage sediment metagenome Raw sequence reads

| PRJNA666025 | ENA

mine tailings metagenome

Project description:mine tailings in different pH Raw sequence reads

| PRJNA379207 | ENA

The microbial taxonomic and functional compositions in three broadleaved forests in temperate and subtropical zones

Project description:Global warming has shifted climate zones poleward or upward. However, understanding the responses and mechanism of microbial community structure and functions relevant to natural climate zone succession is challenged by the high complexity of microbial communities. Here, we examined soil microbial community in three broadleaved forests located in the Wulu Mountain (WLM, temperate climate), Funiu Mountain (FNM, at the border of temperate and subtropical climate zones), or Shennongjia Mountain (SNJ, subtropical climate).Soils were characterized for geochemistry, Illumina sequencing was used to determine microbial taxonomic communities and GeoChips 5.0 were used to determine microbial functional genes.

2017-01-10 | GSE92233 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data