Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pectobacterium carotovorum strain:Polaris

ABSTRACT: Pectobacterium polaris NIBIO1006

PROVIDER: PRJNA344960 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR12301146_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Pectobacterium polaris

Project description:Pectobacterium polaris overview

| PRJNA597093 | ENA

Pectobacterium polaris

Project description:Pectobacterium polaris Genome sequencing and assembly

| PRJNA940320 | ENA

RNA-seq of Pectobacterium carotovorum subsp. carotovorum and P. polaris infecting potato at 24, 48 and 72 hpi, and grown on M9 solid minimal medium at 24 hpi

Project description:Importance: Pectobacterium species cause soft rot in potato and other host plants primarily by secreting a battery of plant cell wall degrading enzymes. In addition, several different secretion systems are mobilized during infection. Previous studies of gene expression and regulation thereof primarily focused on the onset of infection. This work investigated transcriptome changes in Pectobacterium during the infection of potato tubers up to 72 hours post inoculation to elucidate biological processes during a longer infection period. Methods: The transcriptomes of aggressive strains of the two species P. carotovorum subsp. carotovorum and P. polaris were investigated during infection of potato minitubers (cv. 'Asterix') at 24, 48 and 72 hours after inoculation by RNA sequencing. The transcriptomes were compared to that of bacteria grown on minimal M9 medium, and transcriptomes from later infection time points (48 and 72 hours after inoculation) were compared to early infection (24 hours after inoculation). Results: Plant cell wall degrading enzymes and secretion system associated genes were largely upregulated during infection compared to in vitro growth, but downregulated in the later phases of infection compared to the early infection phase. The downregulation was not sufficiently explained by the expression of known virulence regulators such as the RsmA/B or the ExpA/S systems.

2022-04-01 | E-MTAB-7921 | biostudies-arrayexpress

Pectobacterium polaris strain:IFB5252

Project description:Pectobacterium polaris IFB5252 Genome sequencing and assembly

| PRJNA417763 | ENA

Pectobacterium polaris strain:IFB5222

Project description:Pectobacterium polaris IFB5222 Genome sequencing and assembly

| PRJNA417758 | ENA

Pectobacterium polaris strain:WBC9

Project description:Pectobacterium polaris strain:WBC9 Genome sequencing and assembly

| PRJNA596934 | ENA

Pectobacterium polaris strain:WBC11

Project description:Pectobacterium polaris strain:WBC11 Genome sequencing and assembly

| PRJNA596936 | ENA

Pectobacterium polaris strain:WBC1

Project description:Pectobacterium polaris strain:WBC1 Genome sequencing and assembly

| PRJNA596927 | ENA

Pectobacterium polaris strain:Y1

Project description:Pectobacterium polaris strain:Y1 Genome sequencing and assembly

| PRJNA269224 | ENA

Pectobacterium polaris strain:WBC6

Project description:Pectobacterium polaris strain:WBC6 Genome sequencing and assembly

| PRJNA596931 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data