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Epigenetic stress responses induce muscle stem cell aging by Hoxa9 developmental signals

ABSTRACT: Epigenetic stress responses induce muscle stem cell aging by Hoxa9 developmental signals

PROVIDER: PRJNA347647 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR4298900.fastq.gz	Fastqsanger.gz
	SRR4298901.fastq.gz	Fastqsanger.gz
	SRR4298902.fastq.gz	Fastqsanger.gz
	SRR4298903.fastq.gz	Fastqsanger.gz
	SRR4298904.fastq.gz	Fastqsanger.gz

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Epigenetic stress responses induce muscle stem cell aging by Hoxa9 developmental signals [microarray]

Project description:Background and Aims: Analysis of aging-induced impairments in satellite cells (SCs) – the stem cells of skeletal muscle that are required for its regeneration. Hox genes are known to control stem cell function and development of various tissues. Methods: We used AlfpCre mice for liver specific deletion of Trp53 in a conditional knockout mouse model to analyze liver carcinogenesis. Results: Here, we show that liver-specific deletion of p53 in mice consistently induces formation of liver carcinoma depicting bilineal differentiation. Freshly isolated p53-/- liver progenitor cells and hepatocytes exhibit chromosomal imbalances and an enhanced clonogenic capacity compared to p53-positive cells or p21-deficient cells. Primary cultures of hepatocytes and liver progenitor cells from p53-/- mice formed tumors with bilineal differentiation when transplanted into immuno-compromised mice. Together, these results indicate that loss of p53 alone is sufficient to induce primary liver cancer with bilineal differentiation originating from chromosomal instable cultured liver progenitor cells or hepatocytes. Conclusions: The study shows that p53-dependent checkpoints inhibit transformation of liver progenitor cells and hepatocytes involving p21-independent mechanisms. In this study the function of the Hoxa9 was analyzed in murine satellite cells.

2016-11-30 | GSE87811 | GEO

Epigenetic stress responses induce muscle stem cell aging by Hoxa9 developmental signals [RNA-seq]

2016-11-30 | GSE87404 | GEO

Epigenetic stress responses induce muscle stem cell aging by Hoxa9 developmental signals

Project description:This SuperSeries is composed of the SubSeries listed below.

2016-11-30 | GSE87812 | GEO

Epigenetic stress responses induce muscle stem-cell ageing by Hoxa9 developmental signals.

Project description:The functionality of stem cells declines during ageing, and this decline contributes to ageing-associated impairments in tissue regeneration and function. Alterations in developmental pathways have been associated with declines in stem-cell function during ageing, but the nature of this process remains poorly understood. Hox genes are key regulators of stem cells and tissue patterning during embryogenesis with an unknown role in ageing. Here we show that the epigenetic stress response in muscle stem cells (also known as satellite cells) differs between aged and young mice. The alteration includes aberrant global and site-specific induction of active chromatin marks in activated satellite cells from aged mice, resulting in the specific induction of Hoxa9 but not other Hox genes. Hoxa9 in turn activates several developmental pathways and represents a decisive factor that separates satellite cell gene expression in aged mice from that in young mice. The activated pathways include most of the currently known inhibitors of satellite cell function in ageing muscle, including Wnt, TGFβ, JAK/STAT and senescence signalling. Inhibition of aberrant chromatin activation or deletion of Hoxa9 improves satellite cell function and muscle regeneration in aged mice, whereas overexpression of Hoxa9 mimics ageing-associated defects in satellite cells from young mice, which can be rescued by the inhibition of Hoxa9-targeted developmental pathways. Together, these data delineate an altered epigenetic stress response in activated satellite cells from aged mice, which limits satellite cell function and muscle regeneration by Hoxa9-dependent activation of developmental pathways.

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Project description:Epigenetic stress responses induce muscle stem cell aging by Hoxa9 developmental signals [microarray]

| PRJNA347652 | ENA

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Project description:Epigenetic stress responses induce muscle stem cell aging by Hoxa9 developmental signals [RNA-seq]

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Hoxa9 and Meis1 cooperatively induce addiction to Syk signaling by suppressing miR-146a in acute myeloid leukemia

Project description:The transcription factor Meis1 drives myeloid leukemogenesis in the context of Hox gene overexpression but is currently considered undruggable. We therefore investigated whether myeloid progenitor cells transformed by Hoxa9 and Meis1 become addicted to targetable signaling pathways. A comprehensive (phospho)proteomic analysis revealed that Meis1 increased Syk protein expression and activity. Syk upregulation occurs through a Meis1-dependent feed-forward loop. By dissecting this loop, we show that Syk is a direct target of miR-146a, whose expression is indirectly regulated by Meis1 through the transcription factor PU.1. In the context of Hoxa9 overexpression, Syk induces Meis1, recapitulating several leukemogenic features of Hoxa9/Meis1-driven leukemia. Finally, we show that Syk inhibition disrupts the identified regulatory loop, prolonging survival of mice with Hoxa9/Meis1-driven leukemia.

2017-06-14 | PXD004192 | Pride

Cysteine thiol trioxidation induce aging

Project description:LC-MS/MS proteomic method is used to coduct skin and lungs proteomics profiling. Many protein with cysteine thiol trioxidation were identified in tissues of old mice. the modified proteins are predicted to induce celllular aging.

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Neuropeptides:developmental signals in placode progenitor formation

Project description:Few families of signaling factors have been implicated in the control of development. Here we identify the neuropeptides nociceptin and somatostatin, a neurotransmitter and neuroendocrine hormone, as a class of developmental signals in chick and zebrafish. We show that signals from the anterior mesendoderm are required for the formation of anterior placode progenitors with one of the signals being somatostatin. Somatostatin controls ectodermal expression of nociceptin and both peptides regulate Pax6 in lens and olfactory progenitors. Consequently, loss of somatostatin and nociceptin signaling leads to severe reduction of lens formation. Our findings not only uncover these neuropeptides as developmental signals, but also identify a long-sought-after mechanism that initiates Pax6 in placode progenitors and may explain the ancient evolutionary origin of neuropeptides, pre-dating a complex nervous system.

2014-04-25 | GSE48116 | GEO

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Project description:Predicting Neuroblastoma Using Developmental Signals and a Logic-Based Model

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